Gene detail

Detailed information of Chiridota_g5529 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g5529	RING ZINC FINGER	chr_3	38217331	38342291	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g5529

ATGACATCTGAACAAGGTTATTATTTCTTGATTCACATAATCTGCGCTGTTTCCATGGCGAAGAGTGCCATTGAGAGAGGGGCTACAGCTGTCATCTTCGATATCACAGATGATCACACGGCCAGGAAGAATCTTAATGACCTGAGTAGCTTTCCCCTAGAGACCCTCAATCGGCCAGTCATCATAATCGAAGGACAATATGCAAGGACCCTCATGAACATCATCTCCGAAGAAAAGTCAGCCAAAGCAATCATCAGACCAAACTACGCAAATGATACAGGAAAGAATTATCCAGACCAGAGGAATGAGTTTCTTGATATGGGAATCTTCATCGCATTCTTTGTGCTCATCGCCATCATCTGCCTCCTGCTGGTCATTAAGCTGAGGTGGAGGCAACGAAGAAAGCAGGACACTCAAACCCAACAGACTTTGCACATCGTCTCCAAAATGGAGACCAGAAAATATCGGAGGGGAGATCGACGGTCACGTGATGAGCAGGTGACCACACCCAGCGTTACGTCTGACTGCACCATTTGTGCTATTTGTCTTGATGAGTTCAGGGAAGGAGAGGAATTACGAATAGTTCCGTGTACACATGAATTTCACAAGCACTGCGTAGATCCATGGCTTCTTTCCAACAAAACATGTCCGCTGTGCATGTATGATATTCTTGACCCATCAGATAATGACAAGAGTGAATCACCATCAACCAGTCAGAGTCCTGCTGATCAATACACTGGCCTGATGGTCAATCTTCCAACCACGTCATCTCAGGAGCTCCCCCCGCAGGAACAACTCAACACCAACCCCCATGGTTCGCATCGATACCAGGAAATTCCTTATTCTAATAGACATTCCAGATACAATGGATGGATGCAGCCAAGTTCCAGACGAGAAAGACGACCAATGAGTTACAGTGGACCTTACTTAAAAGAAGAACCTCAGTGTTTTGTATCTTCCCGAAATGGGACAGAGAGGTGGCTGTCAGGTGTGTCGCCATGGCAACCACCTTCGTGTGACTTTGTATGTTCAAGATGTCAAAGGAGAATTAAGTGTGGAAACAGTAAAAGCAATCGGCGGTCTCATGCCGTTCAGGGTCCAGGTTTTGCATCATTTGAAAGTCATTACATGGCTAGTTTGACAGCCAATCAGTATGTACCAGTGACTGAAGTGTGCTATGCAAATGGAAGAGTGCTGACTCAAAATACGAGACAATTAcacgtgcactgcaccccagtgcaggtgcacgtccaGCCCATACAGTCTGGTTTGGTTGCAGACGAATCTGCATTTCTCAGGGATTCAAGTTCTGATTCCAGTCTGAGTTTATCAGCTTTTCATGCTGATTACGAGTGCAGCGATTCATCAAGCAGCCCGGAAAACGAAGACAGTAATCGTAGTGTATATGGCAGTTCCACTACATGCAAAAGCGATCCAGCACCGGTTGATCCTCAACTTTATTCCAGACCTGGTGCAGTGGAACAGAGCTGGACAGAAATGGATCCAACGACATTAACTCCAAGTTGTGTCCATAAGAACGAGATTAGAAACTCCCATGGCAAAGACGCCAAACTAGGGAATAAGAAGGGTAATTGTTCAGATAACGAGGAACTGAAACGTTCAGGAAGTGATGCCTACCACAGTAGCGGTAGTAATTTTTCAACCAAAGCCTATGTGGCATGTCGGGATAGTCCTTTACCATACAAACCTTCCATGTCTAGTCCAGTACATACAACTTTTATCCAAGCATTTGTAAATACATCCAAACAAAAAAGCCATTCTTTTCCGAGAACTTCTGAAGGGCACAAAGGCTGTGAAGGGTCATCATCCAGGAGAAAAGACCACGCAAGACATAAACGAAAAGATAATAACAGAATTATTGAAATCAAATCAAGGCCAAAGGCCATGACCCCTGATGGTCGAAGCAAATCTTGCCAGTGTTGTAAGACACATAACATGTTGGAATACCAGGGTCTATCTTCCTCTAGGCACAGGGAGCGTAGAAGTAAATCGCTGGACCGAGCTGCGGAATGTGGAGAAACTAGTCGAAGAATAATGCATGAGCAACGACGTGAGGATAGATGCAAGAGAGAGAGACGGAATCACAGGACAGAGGAGAACGTGCAGTGCAAGACGAGATCAGAGAGGCAAGGTCATAGAGCGAGAAAGTTGAGAGCCCACCTTAGTCTTCCGATTCAGTCAATTGTAACTGTGGATCCCAAAATGCAAGaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgccgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaaaagcttagcctctcctatgcttttagagtcctcaccaacacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaaactcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccatcaacaacctttctcgtatcgacaacgttcatattacccgtcttagaattggtcacacccacctcactcactcccacctccttattggttccccccaacccctctgtaacaattgccactgcatccttacaatccaacacgttctccttgcttgccccctgtacaaccttcccagagcttctctcgctccccacaactcaattgctgagttcttccaaaaaaatcctccagataaaatagtctccttccttcagcatgcatccctctacaaccatatttaa

Transcript

Chiridota_g5529

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan
PF18212	ZNRF_3_ecto	ZNRF-3 Ectodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040700	Domain	ZNRF-3, ectodomain	Interproscan
IPR051073	Family	ZNRF3/Arkadia E3 ubiquitin-protein ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16200	RING ZINC FINGER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-