Gene detail

Detailed information of Chiridota_g5295 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g5295	RING FINGER PROTEIN 25	chr_3	30661109	30670628	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g5295

atgGAATGTGAGGACAAAATCATGAGCAAAAGTTGTTCAGAATTGCCTCTattactgtactctgcctcttcattctgcattactgtactctccctcttcattctgcagtatccagttgagcttccagacatttgcatCAAGAATCCAAGAGGGATCTCAGAAGAGGAAGTCATAAGCCTGAAAAGGGATCTTGACAAATGTGCCTCTGATCGACAAGGAGATCAAATGCTGTATGAATTGATTGAGTTGGCCAAAGAAAGCTTGACGCAGAATAATACACCAAGTTGTCCATGTGTCATATGCTATCACAATTTCCAGGATGATGATGAATTTACAAGAACGGAGTGCTATCATTACTTTCATTGTCACTGCTTGGCTAGGTATATCCAGCATACTCAAGAAAATGAGAAAGAGGAAGAACTGATATGTCCAGTGTGTAGAAAACCAATCAACGATGACTTGGATCTACTCAAGGATGCCATCCCTCCTCGTGAAGAGGTTGAAGGGAGTTTGATTGATGTGAAGATGAAGAAATGGCAGAAGGAGATGGATCAGCTGAAGGAGAAGCAGCTCATGAAGGGCGGCATCATCGATGTGGAGGCCAACAGCAACAGGTTCCTGCTAGACATCTCAAGTACACCAACAACTCTTTTCAAAGTGTCTTCTGCCGCCTCCTTGGTAGAACTAGATGAATCAACAGACGCGACAATAAATGAACAAGAGGGAGACATCACCAGTACAAGAAAACATCAAAAAGAGAAGCCATTATCTTCAGCTGGGAAGAACAAGAGTAATGAGAGAGGTCACAGTTCAAAGTCTCACAGACAAAGTAACTCGTCAAGATATGATAATGCCAAATACAATCAAAGCAGAACATCTCTGAACATAAGAAGATCCAACAGGGATTGGCACAGGAATGAACGACCCCAATCTGGAAACAGAGGTACAGGATATGATGAGAGGAGAGGTAAACATGAAGATGAGAAATCATTTTCCTTGAGAAGTAGAACTCAAAATGAAAATAAAGTTTCAGGTAAAGGAGGTCATGAAAATAAAGGTGAATCTTTaggtaatacacaggcttcaggtaatacgcaggcttcaggtaatacgcaggcttcaggtaatacgcaggcttcaggtaatacacaggcttcaggtaatacacaggcttcaggtaatacacaggcttcaggtaatacacaggcttcaggtaatacacaggcttcaggtaatacacaggctttaggtaatacacagAATGAGGCTAGTTTTCAGGAGGAGAAAGGTTTTGACAAATGTAAAGTACCTATTAGTGTATCAACAAGTGGGAAGAGTAATGAACACAAAGATAAGCCTCAAACAAATACAACTGTCAAAGAGAGTAGTTTGCCTGCTCGAGAGAGAAGCGGTAACGACGAGAACAGAACAAAGAGAGGCAAAAGTGACCTAGAGAGAAGAAATGGCCTTGAGAAGGAAGCTAAAGATAAAGTGGATGTAGAGGATGACAAAGGATTTAATTTGTATGGTGAAAGTGAGGGAAAGGATCTTAAAGCAGAAGACCCTTATAAGAATGGTAAACTTGTATCTTTAGAGTTTGTTAGTTCTAAAAATGCTGAGGGTCATGGCAGTTTAGAATTAGGGTCAAAGAGGGAGAAAATGAATTCAGAGTCAGGAAATAATAAAGGTGAGAAAACAAATAATAGAAAAGATACTAGAGGTAGGGGTTGTGCTGGCAGACACAGATATGGTGATAGGGAGAGGGAACGAAGACATGTAAATAATGAAGGAGAGGGTAAAGGAAGTGTGGGAAGTGGTCACAGAGGAAGTAGGTCTGGAAGGGGTGGCATAGCCAGAGAAACTACACGTAgagatagggaaatgggagaggggagaagaggtaggggaaatccagatgtaagtaggggatggagaggagaaggcagagggcgagGAAGGTCAGATAATGAAAAGATGGAAAGGAAAGAAAATCCCGAAAATAAGAAAAATAAAAAAATTACTAGAAATGAGAAAAATAATGTAACTGTCAAAGATTTGATCAATGATGTATACCAGTCTCTACAAAATGATAATTATACAGAGAGAAGGGATGATGGGGATGTCAAACTTGAGAAGAAAAATGAGTCATCTTCATCTCCGTCAGAAGATGGTAGAATCAAACCTCCACCTGGATTCAAATCTAGGGGGAATGCCCTCAGACCACCCCCAGGATTTAGGGAAAAACAAACATCCAGTGAACCTCACAGACCTCCCCCTGGCTTTGAAGAGCTCAGGTGA

Transcript

Chiridota_g5295

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773	RWD	RWD domain	Domain	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR039133	Family	E3 ubiquitin-protein ligase RNF25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13198	RING FINGER PROTEIN 25	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-