| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Chiridota_g4776 | SNF2/RAD54 FAMILY MEMBER | chr_3 | 14924670 | 14981086 | + |
| CDS | |||||
| Chiridota_g4776 | |||||
| Transcript |
| Chiridota_g4776 |
| Protein |
| Chiridota_g4776 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00078 | RVT_1 | Reverse transcriptase (RNA-dependent DNA polymerase) | Domain | Interproscan |
| PF00176 | SNF2-rel_dom | SNF2-related domain | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00665 | rve | Integrase core domain | Domain | Interproscan |
| PF17919 | RT_RNaseH_2 | RNase H-like domain found in reverse transcriptase | Domain | Interproscan |
| PF17921 | Integrase_H2C2 | Integrase zinc binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000330 | Domain | SNF2, N-terminal | Interproscan |
| IPR000477 | Domain | Reverse transcriptase domain | Interproscan |
| IPR001584 | Domain | Integrase, catalytic core | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR001878 | Domain | Zinc finger, CCHC-type | Interproscan |
| IPR001969 | Active_site | Aspartic peptidase, active site | Interproscan |
| IPR001995 | Domain | Peptidase A2A, retrovirus, catalytic | Interproscan |
| IPR012337 | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR021109 | Homologous_superfamily | Aspartic peptidase domain superfamily | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR036397 | Homologous_superfamily | Ribonuclease H superfamily | Interproscan |
| IPR036875 | Homologous_superfamily | Zinc finger, CCHC-type superfamily | Interproscan |
| IPR038718 | Homologous_superfamily | SNF2-like, N-terminal domain superfamily | Interproscan |
| IPR041577 | Domain | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain | Interproscan |
| IPR041588 | Domain | Integrase zinc-binding domain | Interproscan |
| IPR043128 | Homologous_superfamily | Reverse transcriptase/Diguanylate cyclase domain | Interproscan |
| IPR043502 | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR049730 | Domain | SNF2/RAD5-like, C-terminal helicase domain | Interproscan |
| IPR050496 | Family | SNF2/RAD54 Helicase and DNA Repair | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45629 | SNF2/RAD54 FAMILY MEMBER | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004190 | Molecular Function | aspartic-type endopeptidase activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0006508 | Biological Process | proteolysis | Interproscan |
| GO:0008270 | Molecular Function | zinc ion binding | Interproscan |
| GO:0015074 | Biological Process | DNA integration | Interproscan |
| GO:0015616 | Molecular Function | DNA translocase activity | Interproscan |
| GO:0140658 | Molecular Function | ATP-dependent chromatin remodeler activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |