Gene detail

Detailed information of Chiridota_g3892 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g3892	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	chr_2	77114755	77232006	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g3892

ATGGCTGAGGTAGATCCAGAGACGCTGCTTGAATGGTTGCAGATGGGGCAAGGGGAGGAGAGGGACATGCAACTTATTGCCCTGGAGCAGCTGTGCATGCTGTTGCTTATGTCGGACAATGTGGACAGATGCTTTGAAAGTTGTCCTCCAAGAACTTTTCTGCCTGCCCTATGTCGCATCTTCCTGGATGAGCAAGCCCCTGACAATGTCCTGGAGGTGACTGCGAGGGCCATCACGTACTACCTAGATGTGTCAGCAGAATGCACACGACGAATCGTGGCAGTAGATGGTGCCGTCAAAGCATTGTGCAATAGACTTGTGGTCATTGAGATAGGGAATCGTGCTAGTAAGGATCTAGCTGAGCAATGTATCAAGGTTTTGGAGTTCATGTGTACCAGGGAGTCTGGTGCCATCTTTGAAGCTGGCGGTCTGCAGTGTGTGTTGACGTTCATCAGGGACAGTGGTCACACAATACACAAGGACACCCTTCATTCTGCCACCGCGGTGGTGTCCCGTCTTTGCGGTAAAATGGAGCCAAGTGATCCCTCCTTGGAAACCTGCGTAGCATCCCTTTCCACTCTCCTGAAGCATGAAGACACTCATGTAGCAGATGGAGCCCTACGCTGCTTTGCATCCCTAGCGGATCGTTTCACCCGTCGAGGTGTTGATCCCGCTCCTCTCGCCAAGAATGGTCTCACAGCGGAACTGTTGGATCGACTTGCAAACTGTGGGTTACCATCTACCTCCACTTCCTCTGGTCAGGGGAGTACCCCCAGGGGTGCAGCAGGTGCTACCCCAGAATCAAAGAGCAGCGCAAATATCTCAACAGTGATAAGTTTGTTGTCTACTCTATGCAGAGGTTCACCAGCTGTAACTCATGACCTTTTGAGAGATGAACTACCAGAAGCAATTGAGAAAGCATTACTAGGCGATGAAAGATGTATACTGGACACAATGAGGCTGGTGGATCTTCTCCTTGTGCTTCTCTTTGAGGGACGTAAAGCTCTTCCCAAGTCAAACATCGCACCAAAGCTTAGGAGCAGCACTTCCAGCCTCAGGAGACTGGACAGTGCAGGGGAGCGGACCCACAGGCACCTCATTGACTGTATAAGAAGCAAAGACACGGATGCTTTGATAGATGCAATAGATACTGGGGCTGTTGAAGTTAATTACATGGATGATGTTGGTCAAACATTACTCAACTGGGCCTCAGCTTTCGGAACTCAGGAAATGGTGGAATTTTTATGCGATCGAGGTGCTGATGTCAACAGAGGTCAAAGGTCATCGTCTCTGCACTATGCAGCCTGCTTTGGAAGACCGCAAGTTGCAAAGACCTTGCTTCGTCATGGTGCTAATCCAGATTTAAGAGATGAGGATGGGAAGACCCCATTGGACAAAGCAAGAGAGAGAAATGATGAAGGTCACCGGGAGGTCATCCAAATTCTACAATCTCCTGGTGAATGGATGGTGCCTGTCTCCTCCACCCCGGAGCCCACAACAACCATCGCATCATCAGAGGTGGCGAAGATAGAAGAGGAGAACACCGAGAAGGAACCCACGGGCGACCCCGAGATGGTCCCCATCTACCTGAGGACGCTTCTCCCCATCTTTGCTCAGGTTTACAATAACACCATGATGCCTTCTGTCAGAAAAGCGACCCTTGCACTCATCCGCAAGATGGTCCACTATGCTCCTCCTCAGCTCCTGGGGGACATCTACAGCTCTGACATCACCGGGTTCACCCCTATTCTTGTGGAGGTCTTGGCAGCTGTCCTTGATCATGAGGATGATGATGAGGGCCACCTGATAGCCCTTCAGATTATTCAAGATTTGATGTTCAAAGGCTCAGAGCTCTTTCTGGACCACTTTGCAAGGCTTGGAGTTTTCAGTAAAGTTTCAGCATTAGCTGGTCCTATGGAGGAGATTGAAGAAGAGAACACTATAACTGAAGAGGGAAAGGAGAGAAAGCCGGAAGCACCAGGTTCAGAGGTTGAAGATGCCAAAGAGATACTCTCAGGTAGACCGTATCACTGGAAGGATTGGTGCCTGGCGAGAGGCAGGGACTGCTTGTATGTCTGGAGTGATGCAGCTGCGCTTGAGCTATCGAATGGAAGCAACGGCTGGTTTCGGTTTATCTTGGATGGGAAGCTGGCCACCATGTACTCCAGTGGGAGCCCAGAAGGGGGATCAGACAGTACAGAGAGCAGAAGTGAATTTGTAGAAAAACTTCAAAGAGCCAGAAGCCAGGTCCGTCCAGGTATCACAAGCCAACCCATACTGTCCATTATCGGACCGGTCAGATTGGTGGTAGGCAACTGGTCACTTCAATGCAAGAAAGAAGGAGAGCTGATAATTCATAATTCAGATGGCCAGCAGCAAGCCACTATTTTGAAAGAGGATCTAGCTGGATTTATATTTGAATCCAATCGTGGGACGAAGCATTCATTCACGGCAGAGACCTCTCTGGGACCTGAATTCTCAACAGGTTGGACTGGCAAGAGAGGCAAGCGACTAAGATCCAAGGTTGAGCAGGTGCAGCAGAAGGTGAAAAATTTAGCCCATGAAATATATCAGACGTACTTCAAAGCTGCTGAGTCCCATCCTCGTGATGTGGTGGCAAAACTGCACCACATCGTGGAGCAGTTGGAGAGGGCGTGTGATTTGCATAATGAATTAATTAGGCCCAAGGAAGGAGATTCTACTTGGCAAGGAGAACTGCAGGCAGCCATTATGTCGCTGTCGTATTTATTAAAGGAAGAAAATAGTATATCAGCATATGAACTACATAGCAGTGGTCTGGTGCAAGCTCTTTTGCATTGTCTCAATGATGGCTTTGATCAAGTTGCTTTGTATGACAAACATCTGAAGGAGCGAGTCAGCGTATTCAAGACTTCATTCAAGAAGAATTCTAACGATGAAGATAATGCTGCCTCAGCTGTAATATTGGTGCGCAAACTGATTGCTGTTCTGGAGTCGATTGAGAAGCTGCCTTTGTTTCTGTTTGATACTGCAGGGGCTTCCTATGGGCTACAGGTTCTTACTCGCAGACTACGATTCAGATTGGAGAGAGCCAATGGCGAAACAGCTTTGATTGACCGGACAGGTCGCACTCTGAAAATGGAACCATTAACAACGGTAGCAAGTCTGGAAAGATACCTGCTGAAGATGGTTGCCTTTCAGTGGTACGATTACGAGCGCCCCACTTTTACGTTTGTGAAGCGCTTGAAAGAAGGACCGCCCATCACATTCAGACACACCCATGATTTTGATGAAAATGGCTTCGTTTATTGGATCGGAACAAACGCAAAGTCTGCTTTTGAGTGGGTCAACCCAGCCCAGTACAACCTGATATCTGTGACATCATCAGAGGGCCGCACTTTGCCGTATGGCAGACTGGAGGACATTATTAGTCGAGATTCATCTGCCCTGAACTGCCACACTAATGATGACAAGAAAGCTTGGTTCACTATAGACCTCGGTGCATGGGTGGTTCCCTCGGCCTACACTTTGAGGCATGCCAGAGGGTACGGAAGGTCAGCGCTGAGGAACTGGTTCTTTCAAATGTCAAAGGACAACCAGTGCTGGACCAACTTGTTTGAACACAATGATGACAGCTCACTTAACGAACCAGGATCCACCGCCACATGGCCTGTAGTTCCACCAGAGAGTGAGAAGAAAGGATGGCGCTATGTCAGATTACAGCAGAATGGCAAAAATGCCAGTGGTCAGACCCACTATCTGTCATTGTCAGGGTTCGAGATCTATGGCACCGTCACTGGGGTTTCCGAAGAGGCTTTGATGAAACCACCAAAGGAGTCGGTTCCAAGTCAGCGCAAACAGCAGCATCGTCTGGTTCGATCTCAGGTCCTAAGGCAAATGGTGATGGGTAAAGGAGGCAAGGACTGGAAGTGGTGTGAACTGATGGGTGACCAGGGGTCAGAGCCGGGGTCAAGTGAGAGAGAATCTCTATTTGCAGCAGTGTTGAAAGCCGCTTCTCAGGGGGACAGCAGCAAAACAAGCGAATCTGTCACATCTCTTGTGAACAAAACACTTTCTGCAGCCTCTAGCAACAGAGCACCTCCCATCTCAGCCAGCAGCCAAGCCTTGAGGCATCATGCACATGCACAACAGCAGAACCAACAGCTGAACGCTCAACATGCACCATCTCTTGGCAGAAGCAAGAGCAGTTCCACGCCAAGTCTCAGTGCAACGGAGGAAGCTGAGATTAACACTACGGCCAAAGATCGTGACCATGCATCTACCTCTGATCTATCGACATCACATTTTCTGCCCTCAACAGCAGTGATGGATCAGGTGTTACTTGGAGCAGCTGCGGGTATCAGTGAATTAGGAGCGGAGAGTCTGCTAGTTAAACCCGGTGTGCAAGTTCATGAAGAAGAGAGTCTTGAATCAATTTCAGAACCTGCACAAGGAGCCACTACGACGAGCAGCATGAGCGTAAGCGTACCAAATCTTAGCAGTGCCAAAGATGTAGTATCCAGTCTGGCTGACTCACTGCCGTCTCTCATGAGGAGGAGCAGAGGCAGCGTGAGCAGTGTGTTATCCAATCGTAGCAATACTCTCAGCTCGAGCTTCGTCAGGTTTCCTCTGGCCTCGGCTCTGTCAGATCCTGGTAACTTTCTGAGCAGTGCACAGAGTGCCCCCAACTTACCCTCAGCCACCACCACCACGTCGGGCCCATCCTCAACCACAAACACCACCCATCATTGCACCATGGCCACGGGCACCCTCAGCTCTGCACTGGCCACCAGCCTCACGTCCACGTCCAGTGAGAGTGACAATGAATTCCTTGAGACCTGTCGGGCCAGTTCGTTATTGGCCGAGTTGGTGGATGAGGATTTCTGTGCTGAACCTGAGGACTTGgatgatgagaatgaggatgatagtggggatgattatgacgatTTCACGGAAGAGGATGACTTTGATGTTCGTGGACGTGGCCGAAAAACCTGGGACGATGAACATGTACTTAAAAGACAGTTTTCAGCCCTCGTTCCTGCATTTGACCCTCGACCTGGCAGAATCAATGTACAGCAAACAACCGACCTTGAGATTCCTGTACCAGGTACACCTGACACCTCTCTTATTGAGGAACCAGAGTCTACTCCAACACCAAAGCTAGTCCTTagcatcaaggggcctggactcccagggATCCCAGACTCTGAAGTTCAATGCGATGACCCAGAATCAACGATATTTAAATTTGTTCAGAAGCTTTACCAACAGACCCCCACAGGCCTCAAGCAGGACAGGCTGAGGAGGATATGGGAGCCAACTTACATAGTTGTGTATGGAGAATTGAAATCAGATGAGAATTCACAGACAGATGAGGAGAATACTGAGGGACCATGGAGTGTAGGGTACGTGGAGCGTCACCTCGGTACAGAGAAGCTACCCAAATCGGAGGTTATTGCCGTCATGCAACAGTACGCAGATGTTCCTTTCCTCAGAAGATGGAAACTAATTGGAAATGCAAGAAGTGTCCGAAAGAGCAAAAATTGCACAAAGTTGGTTGCAGCATATAAGGAGTTTCATCAACTTGGTTTTGCTAAGAGGTCCGGTGATCACGGAGCCAGCACCGTTGGTGGCAGGAGAGAGCACCAGCCATGCACTGTTGATGATGTCCTTCAACTGTTGAGGGTGTTACATGCAATCGCCAATGACTACAGGGACTTTGAATCTCGGTCAGATTTTGACAGCCCAGAGTTCAGCGTTCCATTGGATGAATTTTACAGCAAGAAAATCACAAACAAATTGACCCAGCAAATTCAGGATCCCCTGGTGCTCGCAAGCTTATCCTTGCCGGAGTGGTGTGAGAAACTGACCCATCGCTGCCCCATGCTGTTCCCCTTTGAGACCAGGCAGCTTTATTTTAGTTGCACAGCATTTGGAGTGTCCAGAGCCATTGCCTGGTTACAAGGGAAACGCGAGTCCACAACTGACAGGGTTCGCACACCGTCAACAAGGAGAGAGGAACAGCCGGAGTTCCAAGTGGGTCGTCTGAAGCACGAACGTGTCAAAGTTCCACGAGGAGAGCAGTTGTTAGATTGGGCTGTTAATGTCATGAAGCTGCATAAGGATAGGAAATCTATCCTGGAGGTGGAGTTTTGCAATGAAGAAGGGACAGGTCTTGGTCCCACCTTGGAATTCTTTGCACTCACTGCTGCAGAATTGCAGAAAAAGTCATTGGGCTTGTGGCTGTGTGAGGATAATTTTGAGGAAGATTTTGCCAGAGAGGTTGATATAGGAGAAGGCATACGACCTCCGGGTTTTTACATCCAAAGAGCATGTGGTCTGTTCCCGGCTCCACTCATCCAAGACTCCGAGGCCACTGACAGAATCGTGCAATTATTTCATTTCATAGGCATCTTCCTTGCCAAGTGTCTTCAGGACTCTAGAATGGTTGATCTTCCCCTTTCGCAACCTTTCCTAAAACTCATGTGCTCCTCGGAGGTGGAGGCTAATAGGGATACCTTCTCTAGCTCTCCAGAATCCTCCTCGAAAGAGTCGGACATTATACCAACGGAACTCCCCTTCAACGCATCCTTGGAGGATATTCCTGAGTTGATATCGGACTTGAGTCTTGATCAAGTTGAGGGGAAATCAGATTTGTACGCAGATCCACCTAAACTTAAACCGAAAGGATGGTTTGCCGGGATCCTAGGATGGGAAGACTTGGAGCTTATTGATCCTCATAGGGCTCATTTCTTGAGACAGCTACAGGACTTGGTGGATAAGAAGAAAGCGATCTTAAGTAATAAAAGTATGAGTGATGAGGAGAAGAACAACACACTTCAGAATCTGTGCTTAGAAAATCCATCTGGACTACCGATTAAGTTGGAAGATTTAGGcctcacatttcagttcaaccctccttcatcagtgtatGGCTACCAGGCTTACAACCTCAAGCCCTACGGAGATGAAGAACAGGTGACCTTGGAGAATGCAGAAGAGTACATTGAACTCGTTACAGACTTCTGCTTGCATAGCGGCATCTTGAGGCAAATGGAAGCCTTCAGAGAGGGATTCACTGAAGTTTTTCCGATGGATAAACTTCAAAGCTTCAGTTCCTCAGAACTGCAGATGCTATTATGTGGTGAACAAGCCCCGAATTGGACCAGAGAGgacgtcttgaatttcacagaaccaaaactaggttatacaaaagaaagTCCTGGTTTCCAGAAATTTGTCAACGTCCTATGTACGTTCACCGGAGATGAACGAAAATCATTCCTACAATTTACAACGGGGTGCTCATCTCTACCCCCAGGGGGACTCGCTAATCTTCATCCACGTCTAACAATTGTGCGCAAGATAGATGCCAATGATCACACATACCCATCGGTCAACACCTGCGTCCACTATTTAAAGCTTCCTGAATATTCATCAGAGAAAATCCTGAAGGATCGACTGTTTGAATGTCTGACTATTCATGACCCAATGCTGGAGAAAATCGAAACTAATAAAAAGCTTCAAAAATAA

Transcript

Chiridota_g3892

Protein

Chiridota_g3892

MAEVDPETLLEWLQMGQGEERDMQLIALEQLCMLLLMSDNVDRCFESCPPRTFLPALCRIFLDEQAPDNVLEVTARAITYYLDVSAECTRRIVAVDGAVKALCNRLVVIEIGNRASKDLAEQCIKVLEFMCTRESGAIFEAGGLQCVLTFIRDSGHTIHKDTLHSATAVVSRLCGKMEPSDPSLETCVASLSTLLKHEDTHVADGALRCFASLADRFTRRGVDPAPLAKNGLTAELLDRLANCGLPSTSTSSGQGSTPRGAAGATPESKSSANISTVISLLSTLCRGSPAVTHDLLRDELPEAIEKALLGDERCILDTMRLVDLLLVLLFEGRKALPKSNIAPKLRSSTSSLRRLDSAGERTHRHLIDCIRSKDTDALIDAIDTGAVEVNYMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNRGQRSSSLHYAACFGRPQVAKTLLRHGANPDLRDEDGKTPLDKARERNDEGHREVIQILQSPGEWMVPVSSTPEPTTTIASSEVAKIEEENTEKEPTGDPEMVPIYLRTLLPIFAQVYNNTMMPSVRKATLALIRKMVHYAPPQLLGDIYSSDITGFTPILVEVLAAVLDHEDDDEGHLIALQIIQDLMFKGSELFLDHFARLGVFSKVSALAGPMEEIEEENTITEEGKERKPEAPGSEVEDAKEILSGRPYHWKDWCLARGRDCLYVWSDAAALELSNGSNGWFRFILDGKLATMYSSGSPEGGSDSTESRSEFVEKLQRARSQVRPGITSQPILSIIGPVRLVVGNWSLQCKKEGELIIHNSDGQQQATILKEDLAGFIFESNRGTKHSFTAETSLGPEFSTGWTGKRGKRLRSKVEQVQQKVKNLAHEIYQTYFKAAESHPRDVVAKLHHIVEQLERACDLHNELIRPKEGDSTWQGELQAAIMSLSYLLKEENSISAYELHSSGLVQALLHCLNDGFDQVALYDKHLKERVSVFKTSFKKNSNDEDNAASAVILVRKLIAVLESIEKLPLFLFDTAGASYGLQVLTRRLRFRLERANGETALIDRTGRTLKMEPLTTVASLERYLLKMVAFQWYDYERPTFTFVKRLKEGPPITFRHTHDFDENGFVYWIGTNAKSAFEWVNPAQYNLISVTSSEGRTLPYGRLEDIISRDSSALNCHTNDDKKAWFTIDLGAWVVPSAYTLRHARGYGRSALRNWFFQMSKDNQCWTNLFEHNDDSSLNEPGSTATWPVVPPESEKKGWRYVRLQQNGKNASGQTHYLSLSGFEIYGTVTGVSEEALMKPPKESVPSQRKQQHRLVRSQVLRQMVMGKGGKDWKWCELMGDQGSEPGSSERESLFAAVLKAASQGDSSKTSESVTSLVNKTLSAASSNRAPPISASSQALRHHAHAQQQNQQLNAQHAPSLGRSKSSSTPSLSATEEAEINTTAKDRDHASTSDLSTSHFLPSTAVMDQVLLGAAAGISELGAESLLVKPGVQVHEEESLESISEPAQGATTTSSMSVSVPNLSSAKDVVSSLADSLPSLMRRSRGSVSSVLSNRSNTLSSSFVRFPLASALSDPGNFLSSAQSAPNLPSATTTTSGPSSTTNTTHHCTMATGTLSSALATSLTSTSSESDNEFLETCRASSLLAELVDEDFCAEPEDLDDENEDDSGDDYDDFTEEDDFDVRGRGRKTWDDEHVLKRQFSALVPAFDPRPGRINVQQTTDLEIPVPGTPDTSLIEEPESTPTPKLVLSIKGPGLPGIPDSEVQCDDPESTIFKFVQKLYQQTPTGLKQDRLRRIWEPTYIVVYGELKSDENSQTDEENTEGPWSVGYVERHLGTEKLPKSEVIAVMQQYADVPFLRRWKLIGNARSVRKSKNCTKLVAAYKEFHQLGFAKRSGDHGASTVGGRREHQPCTVDDVLQLLRVLHAIANDYRDFESRSDFDSPEFSVPLDEFYSKKITNKLTQQIQDPLVLASLSLPEWCEKLTHRCPMLFPFETRQLYFSCTAFGVSRAIAWLQGKRESTTDRVRTPSTRREEQPEFQVGRLKHERVKVPRGEQLLDWAVNVMKLHKDRKSILEVEFCNEEGTGLGPTLEFFALTAAELQKKSLGLWLCEDNFEEDFAREVDIGEGIRPPGFYIQRACGLFPAPLIQDSEATDRIVQLFHFIGIFLAKCLQDSRMVDLPLSQPFLKLMCSSEVEANRDTFSSSPESSSKESDIIPTELPFNASLEDIPELISDLSLDQVEGKSDLYADPPKLKPKGWFAGILGWEDLELIDPHRAHFLRQLQDLVDKKKAILSNKSMSDEEKNNTLQNLCLENPSGLPIKLEDLGLTFQFNPPSSVYGYQAYNLKPYGDEEQVTLENAEEYIELVTDFCLHSGILRQMEAFREGFTEVFPMDKLQSFSSSELQMLLCGEQAPNWTREDVLNFTEPKLGYTKESPGFQKFVNVLCTFTGDERKSFLQFTTGCSSLPPGGLANLHPRLTIVRKIDANDHTYPSVNTCVHYLKLPEYSSEKILKDRLFECLTIHDPMLEKIETNKKLQK*

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF07738	Sad1_UNC	Sad1 / UNC-like C-terminal	Family	Interproscan
PF13857	Ank_5	Ankyrin repeats (many copies)	Repeat	Interproscan
PF18410	BTHB	Basic tilted helix bundle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012919	Domain	SUN domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR041200	Domain	FKBP3, basic tilted helix bundle domain	Interproscan
IPR045322	Family	E3 ubiquitin-protein ligase HECTD1/TRIP12-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45670	E3 UBIQUITIN-PROTEIN LIGASE TRIP12	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534	Biological Process	protein K63-linked ubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-