Gene detail

Detailed information of Chiridota_g3416 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g3416	WD REPEAT AND HMG-BOX DNA BINDING PROTEIN	chr_2	61344508	61398204	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g3416

ATGTCATTGCAACTTGCTCCGATGCGAATGAGCCACAGTGAAGGGCACACACACGTTTGTTACAACGATTCTGGAAAGCACTTCCTAACGTGCGGAACAGATGGCGACATTCGCATATGGGAAGGACTGGATGATGATGAACCCAAGACAATTGATGTGGGAGATACCACTAGTGTTGTGTGTGTGAAGGGGAAGAGAATGTTCACAGCCACAGAAGCAAACACGGTGCAAGCTTATACCTTCCCAGAATGCAATCCTGATGGAATTCTGTGCAGATTTACAGCTCCGGTCACGCATATGTGCCTCAGTGAGGATGGAAGCAAACTTGTAGCTTGTGCAGAAGATTTTTCAATAAAGTTGGTGGACTTGGAAGAAGAGGGCAGCCAGAAAGTCTTTGATGGACATACAGCACCTGTGCTGACGGTTGGACTGGACCCCAAGCTGGAATACTTGGCATCAACTTCATGTGATGGTTCTTTGAAAATTTGGCAAATAGAAGATCAAAGCTGGGAAAAATCTGTTGCCCTCTTTCCAAAGTGCAACGATACAAGCTTTTCGAAAACGCTTGCACGTGTAGCATGGAAGCCAAAGACAGGAGAGTTTCTTGCAGTTGCTACGGAAAAGGAGATCCAGGTGTATGAGCGAGATTCTTGGGACCTGGCATTCAGCCTCAAACCAGAGGAGGAGACGGGAGGCTTTTTATCCGTCTTGGCGTGGGACAAGTCTGGAGATTTCCTGATCTGCGGAGGAACAGAGGGCCATATTTTTCTTTGGGATGTTGCTTCAAGGAAATGCTTAAAGCAAGCGAAGCACAAGAAGGGTCTTTCTATCTGTGGCATGGCATGGCATCCAAAGAAGCCAGAAGAAGTCGTGTACACGGACACAATGGGCCAAGTGGGTGTTATAGAAGGTGTCATACAACCAAACGAACAGATACCAAAGCCATCCAGTTCATCCGCCCCTGAAGCACCCAAATCATTCGCTGACCTCTTCGATGACATTGCGGAGGAGGATCTTTTGGAGGCTGTCAGCCAAGCAGAGGGTCGGATGGGGGATGACGGGGACAACCAAATGGACACTGATGACATCACAGAGACGAAGGATAAAATCTTTGACTTTATGGATGATAAATCAAAAGATGGAAGTACAGCTGATGGTGATGATGGAACTAGCAGCGTCGGAGACAAGAATGAAGCGCCACAAAAAGTACTACCGCCCTCAGTAACCTTACCTAAACCAACACCACTCCAAAAGCCCTTTACGCCTTCCTCTACACCCCAACATTTGTCCAGCCGGTTCATGAAATGGAATTCTGTTGGCATCATCCGTTGCTATGACAACGATGAGGAATCATCCATTGATGTGGAATTCCACGATGCATCTATCCATCATGCAGTTCACTTTAATAACCAGTTGAACCATACTATGGCGGACCTATCCAGGGAAGCAGTAGCGCTTGCTTGTGAAGCTGAAGGTGATGTTGCCAGCCAATTGGTCTGTCACTACTTTGCATCATGGGACAACCAGAATGAGTGGATTGTCGCCATGCCAACTGGAGAAAGCATCAAGGCTGTTGCTCTAGGAGGAGATTGGCTTGCTGTGGGAACAGATAAGCGGTTAGTGAGACTCTTTACAATTAGTGGAATACAGAGGGAGCTGTTTGCTCTTCCAGGCCCTGTTGTTTGTCTCACGGCACATGGGAAGCAGTTGATGGTGGTTTATCACAGAGGAACAGGTCTTCCAGGTGATCAGTGTCTGGGAATTAAACTCCTGACTATCACGACAACAAGGTCACGTGAAATTGTCGGTGATGCATCTCTGCCGATAAATCCCAAATCTACTCTGACCTGGTTAGGATTCACAGCAGAAGGCACCCCAGCAACAGCAGACTCGGATGGCGTTGTAAGGTTCCTCAATAGAGAAATAATGTCATGGACACCAATTGCCAACACCAAATCACATACCAAAGGAAAATCAGACAACTACTGGATAATTGGGATTCATGAAAGCCCTCAACAGTTGCGATGTATTTTGTGCAAAGGAGCGTTTTTCCCACCTACACTCCCGAGGCCTATACCTTCTATCCTACCATTCCAGCTTCCATTCTGTGATATTGAAACAGATAAGGGTCTTCTTGAGGAGACATATTGGAGGACACATTTGATGAGTCGTCACTTTTCACGGATCCCCGAGGAGGATGTGGATGAAATAAGCAAGCAGCAGGCGGAGAGGACCATGCAAGACACCATTATGAAGATGTTTGCACTCTCTTGTCGAACGGATCGAGAGCAGCGAGCAGCAGATATCTGTAGGCTGATGACCTCTGAACATGCCTGGAATCTAGCGATCAAATATGCCACGAGGTCGAGGAAACTGAATCTTGCACAGCGTCTTGGGGAGCTGGCGATGCAGATGTTGCACGGTGAGGTGAGCGATGATGAGGATGACGAGGAGGAGCAAGAGAATGAAAGGACAATGCACCAAAGACAAAGGAAAAGgagacgagaggatgaggatgatgatgatggtgaggaagaggaggaggatgtggaggttgatgaagaagaagaagaCACCGCAGCACCCATCATAAATGCCTTACAAGTAAAACAAAATGCAGTACCTAAATCATTATTACCAAGCAGCCAGGGAAAAAGAAATCCATTTAAAAAGCTATCGGATGTCACATCAACACCAACGCCCACTCCTCCTGGTGCTAAAGGAGTCAGCTTATTTGATCAGATGAAGAAAAAATCACCCGGGTCTTCACTGAAGAAACAAGGGACACTACCTGTTGAGAAACCAGCAAAGGGACCCAAGGGAAAGAAAAGGACACAGTCCACATTGATGAGCTCGACGACGACCAAAACATCCTCAGTAGAGAGCAATAAAGAAAACGCTAAAATGGAGCAGAAAGAAGAGGAGGGATCACCAGCTCCAAAAAAGACACAGTCAGCATTCAACTGCTGGTTGGAGGAGAGCAGAGATGCCATCAAGGAAGAGAATATGGATGTGGATGATGCGGAGATCGTCAAGATTGCAATCAAGAGGTGGAGAGAGATGGACGCTGATACAAAACAGAAATGGACGGAGAAAGCAAAAGGAACAACGGAAGGTTCTCAGGAATCAGAAAATATCTCAAAGAAAGTAGAAATTAACGGCACCGATGAGAAGGAATCCAGTCAGGAGAAAAAGAGAAAGAGAGACAGTGCTGAAGATGAAGGCGAGAGCGATGTAAACGATGCGGAGAAGAGACCTAAAAATCAGAAACTGATATCAAAGAAGGAGAAAATGATGCCCAAGGCTGCACTCACGACCACAACAAATAAGAAACTCGCAAATTTTGCCTTCAAGAAAGACTAA

Transcript

Chiridota_g3416

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan
PF12341	Mcl1_mid	Minichromosome loss protein, Mcl1, middle region	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF20946	Ctf4_C	DNA polymerase alpha-binding protein Ctf4, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR022100	Domain	Minichromosome loss protein Mcl1, middle region	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR048591	Domain	DNA polymerase alpha-binding protein Ctf4-like, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19932	WD REPEAT AND HMG-BOX DNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0043596	Cellular Component	nuclear replication fork	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-