Gene detail

Detailed information of Chiridota_g283 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g283	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	chr_1	23457008	23481678	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g283

atgactcacccctactatccccggcaatgtcagtcaaagAGAGTTTCCAACTTTGCCAAACTTCTCTTGATCATGCCTGTGTTTCGTGTGGTTGCTAAGCTTTCATCAATCGTTGTTTACATAGCTGGagtcccagatgttcaaaatgcccggatgaccgaatacctaaatTCGGGATtaatgttgcacggtataccagtactaagaaaagtactggtattttatgatgttggactaaaccctatcccctcccttcagcttacgcattatatcaacctcttccatctcggcatcaaccccgccactctcggcacctactcctggcccacttttcctccttgggccactcttttcccgtctgtttacctagacctctccatttatcataaaactcttacccaccctaacctcttcattaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccatcatccaagacatcaccctcagtagcagactccctgactactcatccatcttttcagccgaggctatggccattctccttgccctcaactttattaagtactctcctctcagccactttgccattttctccgactcaaaggcggttcttacttcattactcaatcttaaatggaataacctcacatgccacctcctcctccggaaactcttttctcctgccctctgcaggaaaagggttcttttcatctggatacccagccatgttggcattcctggcaatgacagggctgatgcagccgctaagcttgccctcaacctcctccctacccctcttcccTTTTGCATCAAAATGCTGGATGTTACAGACTTCTCTAATGAAGCTGACCTGAAATCATTCTTGTGGAGTTTGAAAATGACCTTCAAGGAGTTTAAGACGCATGAAAATATTGAAAATGAATTTATTATGGAAAGACTTAAGAGAAGACTCAATTATCACAAAGTGTGCATTCAAGAGGTAGCTGAAGTCCATTCTGATGATTGTCTTGGAAAGATGGCCCGAATGCTTGAAGATGGATGTACCCAAACAGCCACGTGTCAGTCTGCGGATGAGATGGCGAGGATAGGAACGCACTTGGCAAATGCGCTGAGAAAGTTTACAGAAGGGTTCCTGCCTCACATGCAAGAAGAGGAAGAGTTTTTCCAACCACTCCTCATGAAGTATTTTACCTATGAAGAGCTGAAGGAGATTCGATTGAAGGTCCTTCACAAGCACTGCCTGCTCACAAATTTGGAGAAGGAAGACCAAGAGGTGGAATGTAAAGAAAAACTTGAAGAGGAACTTCTTCCGGCCAAAATCCAGCTGTTGCCACCAGAGATAATGATGAAGGTTTTCTCATATTTGAACCCGAAAGAGCTCTGCCGGTGCGCTCAAGTTTGTCCTCAGTGGGGAGGAATGACAAAGGATCCACAGTTATGGAAGGAAATCCATCCTGTGCAATGGGCTCAAGGTGACTGGCGTTTTCACATCCCTCTTGAGGAAGTCGATGAAGTCACTGACACCTCAGAGCTTGTGGATGAAATGAAAAAGTTCAAAATTGACGACGATGCGGACATTGACGAATCAGAATCTTCAGAGGAGAGCGATGCAGAGATTTACAGCCAATCAAAATCCCCCTTTGAGAGGATCAGACTTGAGGCGAAGGTTCTGTCAGATATTGTCAAGTTCTTATTGCCTGCTGTGGGATCTGGTGTACAGTTTGTGAACTTAGCCAGCAGTAAGGCGTTGACAAATGGCTTGGTTTACAAGTTTCTTCAACATTGTCCTAATATCCATGCTTTGAACTTGGCCCAGACTAAAATATCAGATTCAGCCTTCAAGGGGTTACCAAGACATGGCTCATTCCACAAACTAAAACATTTGGATCTGTCTGGATGCTCCAACATCACGGATCGTTCACTCATGAAAATCTCTGATGCATTCAGAAGGACATACAAGGAAAAGCCTAAACCTGCTATGAAGAATGACCATTCGGCAAAACCTATACTTGATAAAAATGGAAAACCGAAACTGAAGTTGGAATACGATAACCACAATTTGCAATCGGAGGAGGATGATGAAAGACTTTTGGGGCGGAGATCGTTTTGTCCTCGTTGTTCATGCGGAAAATCTTCTGTGAAATTCAATGCAGGTGATAGAGACAATAACTTGCAGTGGGCTAGAGACGTTCCAGTTCAATCTCACCCTGACAGGTTCAGAGACATTGATTTTAACTCCATTATGAATGGAGAAAGGACGTTGCAATATCTAAGCCTGTCAGGGTGTTACAAGATTACAGATTTTGGCCTAAGggaaggagctatgattgccccttaa

Transcript

Chiridota_g283

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF12937	F-box-like	F-box-like	Domain	Interproscan
PF13516	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001810	Domain	F-box domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050648	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-