Gene detail

Detailed information of Chiridota_g23249 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g23249	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	chr_13	14122261	14142220	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g23249

ATGCAAGAAAGCCAACAGAAATGCATTCTTTCTACTGCTGAGAATAGCTGGAGAATTACTgaaagctttaaaaaagtttctcctttcctcatccataaagccctctttggccttgtcggtaccctccccaaagtctctacccttagatccggtgatctcctggtgcactgcaccagggacacacaagccaccaccctcctttccaccaaaaccctatccaattctggtatcgacatcacagtcaccccccatcgttccctaaactccagcaaaggcgtcatacgcacccgcgatcttgcgtacatgaccgatgacgacctccaagaagaactagctaaccaacatgtaaccgaagcccgtcgtctcgttctaaagagagacggagccgaaactcccaccaacaccatatttctcactttcgcaactccaactctcccctcccacatcattgccggctacctgagaatccaggtcgccccttatattcctaaccctttacgttgctacaattgtcagaggagccttaaggccaattctgaagaaatcgaccttctggcctccaccttcaacccggtcgtcttctgcctacaagaaactttcttgaaaaccacggaccattactcccttaacaactttgcttgctatcacaaacatcaagtggatgctgacagggcctgtggtggcgtctccattctcgttagacacgatatcccacacagccctgttcgtgtgcacaccgaccttcaggccatctgtatttctatctccctccacaaaactttcactctctgcaatatctatctccctcccaacaccaacattcaaccaaccagccttaacaacctcatctctcagcttcccacccccttcatccttcttggtgacttcaacgctcacaaccctctgtggggctctaataccaccacccctagaggcaagttcatcgaaaacgctctccgtcagcacagcctgtccttactgaacactaactccccgacctaccttcatcctgccacaggctctctcacctgtattgacctgtctatctgttcccctaacctcctccctgactttagttggagagtcactgctgacctctgtggtagtgatcattaccctcttcttatacactccaatcttcaaatccccactgagcacacccccaactggaacctcgacaaggctgactggtccctttttgaaaccctctgtgactcacacctctccccccatcttctcgaggatgaggatcccatgtctaacttcagtaatatccttatcaacatcgccacctgctcaattcccaaaacctccaaacccccaaatcatccccccaacccctggttctcagatgactgcaaaaccgccatcaagaacaggaaaagagccctcaggaactttaaaactaacccgaccacccataaccttaacctctttcgcatcagccgtgccaaggccagacgcactatcaaggacagtaaaaccaacacttggaacaactttatctcttctctcaccaccaacacccccactaagaagatttggagaatggttaacagcttccacggcagagtaggcaaatcttccatctcccatctctcttggaatggagaccttctcaccgcaaaaaaagacatcgttgaccacctcgccgcctctttcagcaacatctcggcctcgaccaactactccaatgctttcaaaatcaaaaaagcttgcgatgaagcccggagaatcacttttccctctgacaactccgaaagctacaacacccctctcactctttctgaattaaaccaagccatcagcgacgctggctgcacctccaagggcccagataacatcccctatcagtttctgaaacacctccccatcaaagccaccactaccctactcaccatcttcaaccacatttggtcctcacactcctttccccctatctggaggacagctattgtcatccccgtccttaaaccggggaaggatagcaccgtccccaccagctaccgacccatcgcccttacttgctgtctctgtaaaattatggaaaagatcattaatcagagactaaactggttcctcgagaccaacagaatcctctctcctcaccaaagcggcttccgaaaacgtcgcaataccctagaccagttaattacgctcgacaccgctatccgggaatcctttgcaaaaaaggaacacctcattgccatattttttgacctcgagaaagctttcgacactacttggaaatacggcattacccggaaacttcacaccattggcctcagaggccacctccccatctttattcaaaacttcctctcacccaggcagttccaagttcgtattggccacaccctctccaagccgtacccccaagaagagggcgtcccccaaggcagcatcctctcccccactctcttcaacctgagcattaatgacatcgggaatgaccttggccccagcatcaaacgtaccctctacgtggatgacttcaccatcttctactcctcccctagctttcctattgttgaaaataggcttcaaaccagcctcaatcagctgcaagtctggagcaacaataacggttttagattctccaaagacaagacagtctgcatgcacttttgtcatttcaacaacctccaccccaacccgaactttgtgctcaatgggaatcgcatccctaaagttgaaaacacaaagttccttggtctaactctagaccccaagctcacctacaagccacacatcaccaacctgaaactaaaatgcaatagctccctcaacctcctccgactgctctccaacactacttggggagcgaaccgctatgctctcctcaaaattttcaggctcaccattcgtgccaagcttgactatggcaatattgtttactgtgtcgctcacaactcatacctcaaccacattaacaccatccaaaatgaagccctcaggctttgtctaggagcctacaggacctccccaatcactagccttcatgttgaagccaacgaacccccctttctacttagatgtaaaaagcttagcctctcctatgcttttagagtcctcaccaacacccagaaccctgtttacaacctcattaggtaccccaatttctcctccctctttgataggactaaaaccctatcgccccccttcagcttacgcattaaatcagacctctttcaacttggcatcaaccccgccactctcggcacctattcctggcccacttttccgccttgggccaccccccttccttctgtccacctagacctctccacttataacaaatctcaaactcaccctaatctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagtcagctgctgctgccatcatccaagacatcaccctcagtagcagacttcctgaccactcatccatcttttcagccgaggctaaggccattctcctcgccctcaactttattgagtactctcctcttagtcactttgccattttctctgactcaaaggctgttcttacttcattactcaatcttaaatgggataacctcacctgccacctcctcctccggaaactcttttctcccaccctctgcaggaaaagtgttcttttcttctggattcccagccatgttggcatccctggcaatgacagggctgatacagccgctaagcttgcccttaacctcctcccttccccttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgtgaccgctggcaaaccttatggaacttccaaattgataacaaactccatgttatccagcccacaatcccgatcaaatccaccattaacaacctttctcgtatcgacaacgttcatattacccgtcttagaattgcccttgtcaaacaaacaaacaagattaaaaaAGGAACTGTTGAGGATAACATTCTGGAGATGTTGATGGACCTGGTATTCCAGCTTCTATGTGATGGAGAGTTGATGCTCGCTAAGATCCTCAGAGATTGCGTCCTCCTCAAGATAGAGGACAACAAGAAGATGGAGAAGATGAGCAATAACGTTCCCGTCTCCGCTCTAAGTGTCTCAGTCTCGAGGCACACATTGTTTGATTTCAGAAGTCTGGACGTCGCTGAACAGATGACCATTCTGGACTCGGAATTGTTCCAGAAAATTGAGATTGCAGAGGTACTACTCTGGGCCAAAGAGCAAAATGAAGAAAAGAGTCCAAACCTGACCATCTTCACTCAACATTTCAACAAGATGTCATACTGGGTGAGGTCATTAATTCTTCAAGAGCAGAAAGGTCATGACAGAGAGAAACTGCTTGTTAAATTCATTAAAATTATGAAGCATTTGAGGAAGCTCAACAACTTCAATTCATACCTAGCGGTGCTGTCAGCGTTGGACTCGGCTCCCATCAGGAGATTAGAATGGCAGAGACAGACTGTGGATGGTTTAACAGAGTATTGTATGTTGATTGACAGCAGTCAGTCATTCCGTGCGTATCGTGAAGCGCTTGCGTCAGCTTCGCCACCTTGCATCCCATACCTTGGACTCATTCTCCAGGACATCACATTTGTTCACCTCGGCAACCCAGATAAACTTGCAGAGTCTGAGCATGTTAACTTCATCAAATGTTGGCAGTACTTCAATATACTCGACAGCATGAGAAGGTTCAAGCAAGAGCAATATGTGACTTTGAAGAAGAACGATGCCATCACATCATTTTTTAATGATTTTACCGACTATTTGGACGAGGAGGCCATGTGGCAGCTTTCCAAGGAAATCAAACCCCAGGGTAAAACTTCTCGAGCGACATGA

Transcript

Chiridota_g23249

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00617	RasGEF	RasGEF domain	Family	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-