Gene detail

Detailed information of Chiridota_g23009 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g23009	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	chr_13	4256796	4277571	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g23009

ATGCGACTCATCTGTAGTTCTGCGCATCAGCTGATCAGGTTGATTTGTTCATCTAAAACTGGTGCTTTGTTCCTTATCTACATAAACGGAAATAAGGTGTTTAAGCGTTCATGTCAAGATCATATTGCAGATAATAATGAAGAAGTCACCTGCCGTGTATCGTGCCTTTCAAGTGGACTCAATTTGATACCGACAGTGACATGTACTTATGGGGTTGAGTTAGTAAGAGTTGGTGCTGAGTGTAACTACACATGCTCCAAGGGATTTAACATGACTGGAAGCTCTAGCAGGATGTGTACATCACTTGGGGTTTGGGACATAGCGAAACCAAGATGTGAAGAAATCACATGCCAAATGCCGATTCTTTCAAATGGACTCCAACTGGTGCCGACAGCAACATGTCCATATGAATATGAGTATGTAAGAGAAGGGGTTGTGTGTAATTACACATGCTCATGGGGATATAATATGACAGGAACCTCAAACATGGTATGCACCTTACATGGGACATGGGATACATCAACACCAACATGTGAAGAAATCATATGTCGAATGCCGATTCTTTCAAATGAACTCCAACTGGTGCCGACAGCAGCATGTCCATATGGATATGAATATGTAAGAGGAGGGATTGTGTGTAATTACACATGTTCATGGGGATATAAGATAAGAGGAACCTCAAACATGGTTTGCACCTTACATGGGACATGGGATACATCAACACCAACATGTGAAGAAATAATATGTCAAATGCCGATTCTTTCAAATGAACTCCAACTGGTGCCGACAGCAACATGTCCATATGGATATAAGTATGTAAGAGAAGGGGTTGTGTGTAATTACAAATGTTCATGGGAATATAAGATAAGAGGAACCTCGAACATGGTATGCACCTTACATGGGACATGGGATACATCAACACCAACGTGTGAAGgaatgagttccatacgtaAAGTAACCTGCCGTGTACCGTGTCTTTCAAGTGGACTCAATTTGATATCGACAGTGACATGTCCTTATGGGATTGAGTCAGTAAGAGTAGATGCTGAGTGTAGCTACACATGCTCCATGGGATATTACATGACTGGAAGCTCTAACAGGATGTGTACATCACTTGGAGTTTGGGATATAGTGAAACCAACCTGCAAAGAAATCACATGCCGAATGCCGATTCTTTCAAATGGACTCCAACTGGTGCCGACAGCAACATGTCCATATGGATATGAGTATGTAAGAGAAGGGGCTGTGTGTAATTACACATGCTCATGGGGATATAATATGACAGGAACCTCCAACATGGTATGCACCTTACGTGGGTTATGGGATACATCAACACCAACATGTGAAGCAACTTGTAATAGTTGGACGTCTAACAATTTAGATGGATACAACTACCATGTTTGCAACTCACTACATACATGGAACAGCTCGTGGCAGGTATGCCAAGATATTGGAGGTGACTTGGTATCAATTCATTCTGAGGAAGTAAATTTAAACGTTAAATGGTGGGCTGATCCTTTGCACACAGTAACATATTTTTGGATTGGCATGAACCGTTCAGAGAACAACCTATTTCATACATGGCCTGTTCAATTACAGTACCTTATTATCATAGATGATATGTACAGATATACAGTGAGCTCTCATCCGGAGTGTGCAATGTGGTCCGATGGGACGTCTGTAAACTATGAAAAATGGAACAGCAATCGCAATAACCCTTCAGGTAGAAGTCCAGGAGACTGTGTTGCGATACATACAGGAGATGCTAAATTAAACAATGAGAAACACTGCAAATTTGGTTTGATTaacgccaggtctttacgcaacaaaactgaactctttttacattatgtagtcacagaggagttggatttttgtctagttactgaatcctggattaaggatatcgacacagtagatttggccgcactaaggccaaatggcttcaattttattaacgtcgaacgcaaaactcgtgtcggtggtggaattggtctgttctttaaagatgatttatccgtcagtttaacagaccatggtgaatacacttcatttgaatatgcgctttttgctgtcaaaattaattcatttacatttgacttggtcgctgtatatcgtcccccatattcagcccgccatccagtgacattgcctacatttatgagcgaatttgcagattttgccagtgatatatctttatcagctaacagacctatattcatgggagattttaatattcacatgaacaagttttcagacaataatgtacaagaattcatcaccgttctcaattccttgtcattagatcagctggtatcagaaccaacgcatatatccggaaatattcttgacctaatcttggctcgtgatggatgtgatatcatggttaccaacataacgagtggactacacctttcggatcatatatttatcattgccaacattttcacttctcgccccgcagccgaaaggaagctggttcaatatcgcaagcttaagagcattaatcatgagagttttagggctgatgtaaacaatgaacttcagcaaatcttgaatcttgataatctggacgatctggtgaacgaatacaatactcgattacacaaagtcttagatctccatgcacctatcatttcaaagattgttacttcccgacccctcgtaccttggtttgacagcaaagcgtctggactaaagactgccacacgaaacgcggaacgtcgctggattaaccatcccacagctgaaaactcaattctatttcgttctctacgcaacgattacaagcgacatctagagtcacgtaagggtgactatataagagacaaaatagagtcttgcggaaatgattcccgtcaactcttttgcacaattgcgaacattacagggtcatcaaaacacaaccccatgccagaaggaatgtcggacgatcagttagctgatgactttgcccaatacttttataaaaaagttgatcatctgcgaacggatcttgaaagcaacccgatgtatgatccgcttgaattggatatctcgcctttcaattttatgccattgttagatattccagccgtggttgatcttatcaaaaaggcaaaacctacaacttgtgaccttgatccactaccatcgtcattattgaagatgcactgtgatatctttgccccagctattcgcaagattatcaacacttctctgacatctggtgagttccacacttcttggaaacatgcaattgttaagcccctgctaaaaaaaaaaaatcttgaacatattaaaaagaattaccgtccagtgagtaacctctcatttgtctctaaacttgtagagaaagcctttctcgggagttttttccaacatatcgacaactatcaccttctcccaatatatcaaagcgcatatcgtcctcactacagtacagagactcttttggtagcattatttgatgctatattgaacaacatggaacaaaagctactgacgcccctcgttgcaatggacctcagcgcagctttcgacacggtcaatcaccagctcttactagatatacttcagaagcgtttcggcgttcgtgaaaccgcccataaatggctatcatcttacctatctgacaggcagttttcagtacgtgtgagaaagagtattctgaagctgtag

Transcript

Chiridota_g23009

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001304	Domain	C-type lectin-like	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46670	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-