Gene detail

Detailed information of Chiridota_g20817 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g20817	ZINC FINGER PROTEIN ZIC AND GLI	chr_11	38577523	38586987	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g20817

ATGTCTCAATCTACCAGCAAAATTCCGGTAAAGCACCGATGTAGTGAAATGCTAGTAAAGCACCAAAAAACATGTCGGTGTCAAACTGTTGGCATCGGTCAGTATATGGCAAAAATCTCTTGTTTAAAAAGTCTCAATTTACCTTTGAGACAGCCAGTCTGGTTATGCCCCCTCGATACTTACATCGTGAAACTGGAAGTAGATTATGATCAAGATGAGGATGAGAAGAGCTCACCTGACACAGCTGAAGAATGTGGTGGAGATCAGATCGTCATTAAACAAGAAATTGACGACAACCTCATGGAAGTTTGTCACCCATCACAAGAGACCATCCTTTGGACAATGGACCCCACAATTATACCAGGAGGAAGTGTGATTAAAGATTCAGACAAAAATATTTGTGAGGAGGGTAGTGGAGTAAATGTGAAATTGGAAGAAAAGGATGGCAGCAACCCACAATGTTCTGTTCCGCTTGAAATTGTACAACCAATGACAGATGAGGGGGAAGTTTCTTGGCTGTTTCAATGTAGGTTCTGTCAACAGAAATTTAGTCACTCCAACCATCTAAGAACACATGAAGAGACACATACAAATGAGAAGCAGTATCGATGCAGTCACTGTAGTAAGAGATTAAGTAGTTTAAGTTGCCTGAAGGTACATGAAAAAACACACACAGGTGAAAAGCCATTCCAGTGTAAATTCTGTCAAAAGAGGTTTAGGCAATCGGTCCATCTGAAAGTACATGAAAGAAGGCATATGGGTGAGAAACCATATAAGTGCATGCACTGTAGCTATAGTTTTGTTAATTTAGATGGTctgaagtcacatgaaagaacacacaccggtgaaaagccattccattgtaggcactgcagcaaaagcttcaaatattacaagggcttgcagatacacgaaagaacacacacgggtgagaagccatacccatgcaaatactgtgaaaagggttttaagcaattaggcaacctgaaatcacatgaaagaacacacacgggtgataagacataccagtgcagatactgtgaaaagagtctttgtacttcaagcgccctgaaagcacatgaaagaacacacacgggtgagaagccatacccatgcaaatactgtgaaaagaggtttgttacttcaagccacctgaaaggacatgaaagaacacacacgggtgagaagccataccagtgcaaatactgtgaaaagagttttagtagatcaagcaacctgaaagaacatgaaagaacacacacgggtgagaagccataccagtgcaattactgtgaaaagagttttagtagatcaagcagcctgaaagaacatgaaagaacacacacaggtgagaagccataccagtgcaaatactgtgaaaaatgttttagtaaatttaaccatctgaaagcacataaaagaacacacacgggtgagaagccattccattgcaggtactgtgaaaagagttttaggcaatcaagcaccctgaaagcacatgaaagaacacacatgggtgagaagccatacccatgcaagtattgtgaaaagagttttaggcaattaggcaacctcaaaatacatgaaagaacacacacgggtgagaatctgtaccagtgcagatactgtgaaaagagttttggtcaaccaagcaccgtggaagagcatgaaagaacacacacggTGacagacaaaactcaaaaccaccctaacctcttcatcaatctccacaaccaaatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccgtcatccaagacatcacccttagtagcaaacttctagactactcatccatcttttcagccgaggctaaagccattctcctcgcccttaactttattgagtactctctgttcagccactttgccattttctccgaaccaaaggctgttcttacttctttactcaatcttaaatgggataacctcacatgccacctcctccggaaactcctttttcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgatagggctgatgcagccactaagcttgccctcaacctcctccctaccccatcaaaccgcttatcgcttcccttcttcatgaccgctggcaaaccacatggaattcccaaattgataacaaactctatgtcatccagcttacaattctga

Transcript

Chiridota_g20817

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050329	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-