Gene detail

Detailed information of Chiridota_g1995 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g1995	UNCHARACTERIZED	chr_2	12270862	12337643	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g1995

ATGTATTCTGGATGGGCCTCGTTACAAGACCTGATTGAAAATGAAACCACAAATCAGAGTGTGCTACATACGTTTCCAGAGACTGTTGGAAAGGATGTTGCTGTGTCTGTGGTGAGACAACTAGCTGCAAGTCTCTCACTGACCTCCCACAAGGTGGCAGAACATGCATCCCGCAGCAAGCTAGATTCTGACAGACAAATATTGTGGACCATGGAGGTCATCTGTTACGGCTTGAGCCTGCCTTTGACAGAACACGATGCTGTGCGAGATTGTGTCAATGTGTATTGTGAATGGCTGACTGCTCTCACCAGTCCACCACCGTCTCTTCCTCCACCATTGGTCAAAGATCCCAATCCATTTGCCCAAAAGATATTTCAACATTTTGTCAACTTGTTCAAGACAAAAGATCAAGGTGAAAATGACACCAACAAGCAGGTTGTGTTATGCCATCGCGTATTGCGCACTGTACAGTCGGTAGCTGGCTCCAGTATTCTGATGTCCAGAGAAACATGGGAGGTACTCTTGAAGTTCATGCTAGCTATCAACAATAACCTTCTCTCACCACCAGTTGAGCCAGGTAGCCTTGCAGAACAACTATGTGATCGGTTACTTCAGGTTCTGTTTGAAGTCTGGCTTTTGGCATGTGCAAGATGCTTCCCACCACCCATGCTGTGGCGCACATTACGGGAAATGTGCGCTGGGTGGCGTCATCATATTGAGACAGTCCACCAGTGGAGTAGAGTTTGCAGAATCCTCACATCCAAACTATTAGAAGTTCTTTATGGCCCAAACTTTCCCCAGCTGAAAGTGGACACAGAGGATGCCAAGATGGTTCCCAAGGAAATGGATCCAAATACTCTTGCCCAAACCTGGTTCCGCTTTCTTCACATATTAAACAATCCAGTGGATCTCTGCCACCCTCATATTATCGGCCAGACACCTAAATTTGTGTCGTACACCATCAGCCACGATAGTGGTCTTGACCCCATACAGCATCCATGCCTGAAGACACTGCCACAAATCTTCTTGAAGGCAATGTTAGGGATTTCCGTCATGGTTGATGCATTTTTGGGAAACCCAGAAGATCACCCAACTCCAACAACCCTGGATTCACCATCATCTTCAAGCATGCAGTCCTCCTCAGGCCACTCCTCCAAAGACACGCCTCCACAGGTCAGAAAGGTCATGAAGAGCCACTCCACAGTGGTTGCCATCTCCGAACCGTCGACTCTCTTGGACGTCAGCAACACAGACCGAACTGATAGTGCTTTAAAGTTTATTCCAAAGCGCTCCGACTGTAATAGCATTCTTCATCTGTTTGCGGCGTGGCTGTTTGAGGCAGCCCTGCGAGGATGTAAGTTACATAAAACTCAAGAGAAAGAACCGTCGCAGACGAGACGCATCACATTTGCTTATGGCTATCCAATGGCTAATCTCTCCATCGATACTAATACAACTAATTATtcatcatcttcatcatcatcatcatcatcTAAACCTGTAGGCAAAATAAAACGCCAGAATACGGTTGGTTCACCGGCGGAGAGTTACTCCCAACAACCTCGGCCCACACACCATGCAAGAGGGCACTCTATGTATGGAACAACGTCTAACCTCTCAGCTATGTACATACAGGACAAGTCCTTAGATCCGGAGAGCTATGAGGCGGGCCGTGCAGAGGCGTGTGGTGCCTTGTGTAGGATATTTACCAGCAGGAGATGTGGGGAGGATATTCAACCCATCTATTTGGCCCGATTTTATCTGACACTCTCACAAGGTCTTAAAACAGATGAGCCATTAAGTGGACTGGTGCTGTCGAGCATTCTCTTCAACTCTCAGAATCTCTTTCGTATCGACCTCAAGGGGGTCCAGGTTCTCATTCCTCACGTTCTTCCCGCTTTAGAACTGGTCTTGGCAGAAAAGGATCTTAGATTCAGGTCGTTAGTCTCGCAGCAGCAACTCAAACGTGCAGCTATTCATCTGCTCTTGTCTCTCATCAGTTTGCCTCACCACTTTCGGAAACTTGAAATTAAATGTTTGTTGAAACCGATTGATGAAGATGCTGACAAGAAACCGGCAGGTCCCGTTGTGACGTTCCTCTCCTTGAAACCCAGACTCGTTGGTCTTATGCTGGACTCCCTTAAGTGTGAGATTGACCAGTACAACCTACAGATGCTGCTTGGTGCTTTACATCTATGTATCCTGGATTCTGCATTGTGTGAGGAGTATACACGCAACAAACTTAAGATGCAGGAGGCCAGGAAGAAGGAGGAGGAGCAGCAAGCCCAGGAGACCCAAGAAGAGGCGGGGATAGACACAGAGGAGAAGCTGGAGGAGGATCCCAAAACGAAGAGCAGCCCTGAATCACCTGTGATCTCTGAGCCTCACTATTCAACTTGGCTGTTATTGGTGGAGTGCTGCCATCTGGTGTGCAATCAACTGATCACTGTATGGATCATGGAGTATGCCGTCTCACTTGCAGCACTTGAACTTTTGTCTGGTCTTGCCAAGGTCAAGATACACGTGGAGGAACCTCTGGAACTCAAGAAGATTATAAAGTCTGTGTCGTACCTGATTGAGCACCAGTGTAGCTGGCCCTCCATGTACCATTCCAGAGACCTTCATTCCGTCATTGTGGCGGCATTCCAGTGCCTCACTGTGTGGCTCTTGGAACACAGTGACCTCCTTCAAGACAGGGAATGTCTCCAGTGTGTTCTTGAGGTGATTGAGCTGGGAATATCAGGGACTAAATCTCAGCAGACGGTGAATGACCCGCCAGTCATGAAACATGCCAAGCAGCTCAAGCCTACCTCCATGAGGGTCAGAGATGCAGCAGAAGCAGCCCTCTCATCCATCCTTAATCATCTGGATTCCTTCCCAGCCCCATGTGGACCATCTTCACTGGTGTCATTGTTAGATGAAGAGTCTCTATTGGCTCATATGGATTACTCCATTAGTTCGCAAGCCAAGTTCAGGTACTTTGTCCTGGAAAACACCACACTTCTGGCTGTTTTGGAAGACGCTCTTACGGAATCTGAAGATTTGTTGCCAACTCTGACCGTATTGATTCGTGGTCCAACTGGTCGAACTGCATGGACTATGCAACATAGACATATTCCCAGGAAGGGAAAGGATCATGCTGAGGGAGACCGGGTTGCTCCCGGTCGCCCTACACCAAAGGAGGACATCGGAAATCACCAAGAATTAACGAGCAGAAATTATCCAGAGTCTGTGGATAAAATTTCTCCGACAAAAGCAGACAAAAGCATTCCGTCCTTAGATGAGATTGAAAACGAGGCATCTCACAGCGACCATGAGAAGCTCTCATACCTGATGAAAGACCAAATAGAGGTCGAGGAGTTCATCTACGAGAAGGCCTCGGAGGAGATTGTTAACGGCGGGTTTCCAAATCGACACACCGAGGCGAAACCACCTAGACCCAAACAGGACTTCAGTCCTGCAAGGTTATTTCTATCGCACCTTGGATATCTGGCTTTAGATTTTTTGAAAGGGGATTCCACAAGTCCCCTACCCCCAGCTCTGGTAGCCATCAATGAAGCAGGTCCTGGTTTTCTAGCTGATCTCAGAATTTTGGATTCTATATCCAGTCGAACATTTGACACAGTTCATGTGTTTTATGTCAAGTCAGGTCAGAAATTGGCTTCAGACATCTTATCAAATGTGAATTCCAGTGATCAAGTACAGAGTGCTTTCATGGAATTTCTTCACTCTCTGGGATGGCCAGTCCATGTTGGGCGCCATGCAGGATGGACAGGAAATATCTTGACCAGCTGGAAGATTGACAGTGACTCAGTTGTGGAACCGAGGCCGGACGTGAAGATTAACCACGGTGGAAGTCTGTACAATGGTAAAAGCCAGGTGCTGTATTACGCAGACGTCTTGTCTGAAGTAGCATTTGTGGTTCCCAATATACCTGAACAGAAGGAGAGGAATTCCAGCAGTGGTGACTCAAAAAGGCAATCCATCGTGTCCGAGGAGAGCATGTATTCATCTTCGTTGTCCCAAGATTCGCAACCGCTTTCTACCAATAACAACAATAATGAGAGCAGTCCAAGAGACCATGGTGCAGAGAGTATGAGGAAGCTCTCCAGCAAAGGGGGCCCTTTCAGCCTCCCAGAAATCAAACTCCTCGTCGTTTGGGTCGAAAACTTTGAGGACTGTCAGTATTTTCCATTAGCTGATGTTCTCCCAGAGACGCACACAGGAATGCATCAATTTTTGTCCTCCAGCACCGCCTCATTTAGTCGTCCAGCTGAGCCGACTATCGTGCTTATATTTATTCATCCACTACAGAGTGGCCTGTATAGGATATCAATGAAGAGCAAGTCAGCTCTGGCAATCCCGCTGGTCAATGGCATGGTGGTCAGCAGGAGGACATTGGGGGCGCTGGTCAGGCAGACAGCCATTAACGTGTGCAATAGGAAGAGGTTGGAAAGTGATAGcgattgggatctagcggcgtggtcggagcacagactccaccgcgaccggtattttcaaagagcggcggagaaagtggagaagcgacggtccgagaggccctcttcgtcttcccccccgccgcctccgccacccaggcttaaggtgcacccacctcccgtccgggaggtggggccgccgtccactctcagcggggcgcctctggaagggccccctcaactgagcaggcaggagcgggtcgcccagctcttggatttcctggaacgggaaatcaaactggaggtcacggaagtacccctaattgaggcgggcccgcagtctcagcgtagactgctcagctcagcttcaaaggttgcttcgccagcggccaagaatttccccattgatgcctccctggtgtacaggattaggcattgggctaggaccccggccaaggactggacggcctacagccgggacgttgatcaggctacacatgtccagccaactgattttcaggcgctcatacggcctcccggaatcctggatggagtatggcaactcctccgccaaccggcaagcggcaccgcagctgtgtctggctcagtgggcagggctccgaaatttcgtgaccctgcggtccagcggagggatgactccctattagctgtggaccgggccatacgaaggggttataaataccaggcccttgccgtatgggtaacagagggcttagactcggtcttgcgcaggcatttcccgaccgacgtccttacacaaaccctgcctctgttaactggactctcggatttgctcgacgcgacagtcgaccaacttgcccgagcctccactagagcggtccgggagagacgcgagaatgttctccctctccttggactctctgccgtcactcaggaggatcttcggcgattacctactgagggtctggacctatttgctggtcacttccgtgatgtcctgtcgcgccaagctggccgccaagacgatcttcggaagactcagaagctgttagcgaagacgaagtccttttcttctcttcccgctcgtcgCCACCCTTCATCCCCCGTTAAGCGGGGCCGGGGTGCGCCGGGCCAGCGACGGCCCCAACAtcgccgtgacactgtcgctgggccctcttcagctcctccctctcgccaggagtccacttcgtggaccagcagaggggccggggctcctttcccgctgcacgcagagcaggaattttcagaggcttggtggagaatcaccaccgacaaatgggtgttacgaaccattcgacagggttaccgtctggagttcacgtctcccccgccccagggaggattctttcgccccactcccacgcctcgtcagggcgaccacaccgagttgttgaggttagaaatcggggagttgctggcaaagaacgccatcaccttcatcccgaaccctcccaggaaccttgttatgtccacgtttttcctggcccccaaaaaggggaacaagtggcgcccgataatcaatctaagaccgctcaacaggttcatccgaccgttgaagttcaagatggagactcttcgctccatcctccctcaattgacgaggaacctgtgggccacctccgtcgacctcacggacgcatatctccatgtgccgatgttcgaggaacacagacgttttctggcgttccaattcgagggagttacgtacacattcagggcgttacccttcgggctttcgactgcccccagggtcttcacccggattacgagagttctagcggccttcttacgaaggcaggatatcagaatctttatgtacctcgacgactggctgatcgttgcggtagacgcagccactgtcgcgagacacacgaacgtggttatacgggtggcacaggacttagggtgggtgttcaacctcgccaagtccaacctagtgccgtctcagactcccacttttctgggggcagtcctggattttcctcacggtcgtatacggccgacggaggaacagatccttgccgtgagggtgggagccgacgtccttctctcgttaccggcgtcgccggcgagagcctggctggtattcttgggatacctcgccagcctcgtagatgtagtccccatgtgcaggttttacatgcgggatctacaattccatctactgagtcatttcgtcccatccaggagagacctcaacgtcctcgttccccgtacacaggcggtggtcccccacatttatttggtggtggtgcgtccactcgcacctgtcacagggagcgatttttccgcctgtcagaccctcggtatcggtggtaaccgatgcgtcgttgacgggcacatcaatctgttggaactagaggcggtacgccaggctcttgttcacttcctacctcaggtccggaacaagactgttctcatacgcacggacaataccacggtagtggcgtttatcaacagacagggaggtacgagatccaggcctttggatcttagccagatcccttctgtcttggtgcatgttgaacaaggtcacgctccaggcggtccatctgccaggcacggagaacacgattgcggatctgttgtcccgcctacagggagcccccacagagtgggcccttctcccgcgggtggccgaagcgatctggttaaccttcggtctcccggacgtggatctgttcgcgtccgtggacaaccacaagctaccaattttttgcgctctcacacccaactcgagagtctgggcggtagacgcgttcacgatcaggtggacccacttcgtgggctacgccttcccgccgttcgctctcgtgccgagagtactgaacaaggtggcgtccaatcagtgttccatgtttcttctggtggctcccacttggcccggccaactgtggtttcctcagctgctcaatcttgtcgcaggtttcccgtacgaacttccggtcacggacgagttggtctctataccgggttccagcaaactgcaccacaatccaagagcaatccatttgactgtgtggcctctatccgcgaatcccttgtgtcgcaaggtctttcggaggcagctgcccagctggcggcctgtagccggagatcttccactttgggcatgtatgcttccagactcggaatgttccgggactggtgccgggatagatcggtttctccacatacggcgcctcttggtgacgtagcggattttttgttggtccagtttaatctgaataagtccatcaatacggtcaaggggttccgaacggccatagcggctatccaccggggcttcctcgacggctcgactgtcaccgatgcgcagccgttggaaagattgattaaaggtatgttcttgcaacggccttcagttcggaaccttgctcccccttgggatatgcaggtggtcctcgagactttggcacaggctccgtttgagcctctgccggattgtcctctcaaggaactgacgatcaaaatggtgtttttactctccgcagcctcggctaggcggaggggcgctcttcatgcgctttccctcaaggagggtcatatttgctttgaatcggggggcgttcatctcgtacccgccccggccttcttagcgaagaatcagacgctcgagtttctaccggaacctattttccttccggcgctcgctactttttttgacacgacaggggacagggtctggtgtcctgttcgatgtctcaaacactatatcaagcgtacgcaatcttttcggaaggacgtcaccgctcttttcgtgtccttccaacggccgcatcaagccgtctcccgtgatacgatttcacgttggatcgttcaggcgatcacatataataggtccgcgttgttcgcggaacgttcggttcaggcacaccaggtacgaggcatagttgcgtcaattgcgctttttggtggggttccccttcacgagatccttcttgctgcagtgtggaaaacaccagccacgttcgtctcagcttacctggtggatattccggactatcagggcggagttgcacgggccgtgctttctggaagaggaccactcccttcttga

Transcript

Chiridota_g1995

Protein

Chiridota_g1995

MYSGWASLQDLIENETTNQSVLHTFPETVGKDVAVSVVRQLAASLSLTSHKVAEHASRSKLDSDRQILWTMEVICYGLSLPLTEHDAVRDCVNVYCEWLTALTSPPPSLPPPLVKDPNPFAQKIFQHFVNLFKTKDQGENDTNKQVVLCHRVLRTVQSVAGSSILMSRETWEVLLKFMLAINNNLLSPPVEPGSLAEQLCDRLLQVLFEVWLLACARCFPPPMLWRTLREMCAGWRHHIETVHQWSRVCRILTSKLLEVLYGPNFPQLKVDTEDAKMVPKEMDPNTLAQTWFRFLHILNNPVDLCHPHIIGQTPKFVSYTISHDSGLDPIQHPCLKTLPQIFLKAMLGISVMVDAFLGNPEDHPTPTTLDSPSSSSMQSSSGHSSKDTPPQVRKVMKSHSTVVAISEPSTLLDVSNTDRTDSALKFIPKRSDCNSILHLFAAWLFEAALRGCKLHKTQEKEPSQTRRITFAYGYPMANLSIDTNTTNYSSSSSSSSSSKPVGKIKRQNTVGSPAESYSQQPRPTHHARGHSMYGTTSNLSAMYIQDKSLDPESYEAGRAEACGALCRIFTSRRCGEDIQPIYLARFYLTLSQGLKTDEPLSGLVLSSILFNSQNLFRIDLKGVQVLIPHVLPALELVLAEKDLRFRSLVSQQQLKRAAIHLLLSLISLPHHFRKLEIKCLLKPIDEDADKKPAGPVVTFLSLKPRLVGLMLDSLKCEIDQYNLQMLLGALHLCILDSALCEEYTRNKLKMQEARKKEEEQQAQETQEEAGIDTEEKLEEDPKTKSSPESPVISEPHYSTWLLLVECCHLVCNQLITVWIMEYAVSLAALELLSGLAKVKIHVEEPLELKKIIKSVSYLIEHQCSWPSMYHSRDLHSVIVAAFQCLTVWLLEHSDLLQDRECLQCVLEVIELGISGTKSQQTVNDPPVMKHAKQLKPTSMRVRDAAEAALSSILNHLDSFPAPCGPSSLVSLLDEESLLAHMDYSISSQAKFRYFVLENTTLLAVLEDALTESEDLLPTLTVLIRGPTGRTAWTMQHRHIPRKGKDHAEGDRVAPGRPTPKEDIGNHQELTSRNYPESVDKISPTKADKSIPSLDEIENEASHSDHEKLSYLMKDQIEVEEFIYEKASEEIVNGGFPNRHTEAKPPRPKQDFSPARLFLSHLGYLALDFLKGDSTSPLPPALVAINEAGPGFLADLRILDSISSRTFDTVHVFYVKSGQKLASDILSNVNSSDQVQSAFMEFLHSLGWPVHVGRHAGWTGNILTSWKIDSDSVVEPRPDVKINHGGSLYNGKSQVLYYADVLSEVAFVVPNIPEQKERNSSSGDSKRQSIVSEESMYSSSLSQDSQPLSTNNNNNESSPRDHGAESMRKLSSKGGPFSLPEIKLLVVWVENFEDCQYFPLADVLPETHTGMHQFLSSSTASFSRPAEPTIVLIFIHPLQSGLYRISMKSKSALAIPLVNGMVVSRRTLGALVRQTAINVCNRKRLESDSDWDLAAWSEHRLHRDRYFQRAAEKVEKRRSERPSSSSPPPPPPPRLKVHPPPVREVGPPSTLSGAPLEGPPQLSRQERVAQLLDFLEREIKLEVTEVPLIEAGPQSQRRLLSSASKVASPAAKNFPIDASLVYRIRHWARTPAKDWTAYSRDVDQATHVQPTDFQALIRPPGILDGVWQLLRQPASGTAAVSGSVGRAPKFRDPAVQRRDDSLLAVDRAIRRGYKYQALAVWVTEGLDSVLRRHFPTDVLTQTLPLLTGLSDLLDATVDQLARASTRAVRERRENVLPLLGLSAVTQEDLRRLPTEGLDLFAGHFRDVLSRQAGRQDDLRKTQKLLAKTKSFSSLPARRHPSSPVKRGRGAPGQRRPQHRRDTVAGPSSAPPSRQESTSWTSRGAGAPFPLHAEQEFSEAWWRITTDKWVLRTIRQGYRLEFTSPPPQGGFFRPTPTPRQGDHTELLRLEIGELLAKNAITFIPNPPRNLVMSTFFLAPKKGNKWRPIINLRPLNRFIRPLKFKMETLRSILPQLTRNLWATSVDLTDAYLHVPMFEEHRRFLAFQFEGVTYTFRALPFGLSTAPRVFTRITRVLAAFLRRQDIRIFMYLDDWLIVAVDAATVARHTNVVIRVAQDLGWVFNLAKSNLVPSQTPTFLGAVLDFPHGRIRPTEEQILAVRVGADVLLSLPASPARAWLVFLGYLASLVDVVPMCRFYMRDLQFHLLSHFVPSRRDLNVLVPRTQAVVPHIYLVVVRPLAPVTGSDFSACQTLGIGGNRCVVDGHINLLELEAVRQALVHFLPQVRNKTVLIRTDNTTVVAFINRQGGTRSRPLDLSQIPSVLVHVEQGHAPGGPSARHGEHDCGSVVPPTGSPHRVGPSPAGGRSDLVNLRSPGRGSVRVRGQPQATNFLRSHTQLESLGGRRVHDQVDPLRGLRLPAVRSRAESTEQGGVQSVFHVSSGGSHLARPTVVSSAAQSCRRFPVRTSGHGRVGLYTGFQQTAPQSKSNPFDCVASIRESLVSQGLSEAAAQLAACSRRSSTLGMYASRLGMFRDWCRDRSVSPHTAPLGDVADFLLVQFNLNKSINTVKGFRTAIAAIHRGFLDGSTVTDAQPLERLIKGMFLQRPSVRNLAPPWDMQVVLETLAQAPFEPLPDCPLKELTIKMVFLLSAASARRRGALHALSLKEGHICFESGGVHLVPAPAFLAKNQTLEFLPEPIFLPALATFFDTTGDRVWCPVRCLKHYIKRTQSFRKDVTALFVSFQRPHQAVSRDTISRWIVQAITYNRSALFAERSVQAHQVRGIVASIALFGGVPLHEILLAAVWKTPATFVSAYLVDIPDYQGGVARAVLSGRGPLPS*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF20412	RALGAPB_N	RALGAPB N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000331	Domain	Rap/Ran-GAP domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR035974	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR039930	Family	Ral GTPase-activating protein subunit beta	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR046859	Domain	Ral GTPase-activating protein subunit alpha/beta, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21344	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0051056	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-