Gene detail

Detailed information of Chiridota_g18955 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g18955	RING FINGER PROTEIN 127	chr_10	27568072	27585239	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g18955

ATGGAAATGGTAGATCTAGCCCGTGAGGCATATCGTTGCTCAAATTATGACCTTGCATTAGGAATTTATGACAAATTACTACTAAAGTATGGACCAAACATGGAGTGGTTAATAGGCAAAGGATCTTCTTTAGCTCAGCAGAACAGGTTTAATGAAGCTGTCAATGCATTTTATTATGCTCAGAGACTGGGAGATTTGCCGCCATGCAGTCTACTGCATTTAGTGGAAGCTGTAGTACGCTATGTATCAACACGCTCTAAAAAAATAATCCATAAACTTCGTAAACGTGATGTTGATGTTGAGCCCCTTTCATGTGGAATATGTTGTGGAATTCTATTCGAGCCAGCCACCCTTCCATGTGGTCACTCATTTTGTAAAGATTGTTTAAATTCAGAACAATATGTCAGAACCTGTCAAGTTTGTCAGGCCAAGCATAAAGGTTTAACTGCAGCCAAAGTGTGTGTTAATGTTGTTTTTTCTAAACTGATGTGCAAGTTCTTCCCAAGTGAGACCAAAGCCAGGATACTTAAAAGAGATGGAAATAAACTCTTCCAAGAAGAGAAGCATTCTGAAGCTATTCAAAAGTACACTGAAGCTATCAGCATAGAACCACACGACCATTTAAGCTTCAGCAATCGCTCCCATGTCAATTCTGCTCAGGAACAGTATGCAGATGCTTTAAAAGATGCTGAAATTGTGTGCTGCCTAAAACCTCATTGGCCAAAGGGTTACTATCGTAAAGGAGCTGCACTCGAAGGTCTCGGGCAGTATGAGATGGCTCTTCTAGCGTATCTTCAGTGTATAACTCTTGATCCTTCCATTTCATCGGCAAAAGAAGCTATTAGTAAGGTTATGCACAAGTTATTGACTCATTCCCATGGGGCTTACACAAAAAGAGCAGAAATAGGCCTCTTGACCGGCTCAATGGAGCGAGATTCAGTGCCACTGAATATTTTCACAGCTGGACTGTCTCAGCTTATTACTTTAGTCATCAAGGGCTTCCAAGACACCTTACaaagtgaagaagaaaaagacaaaaagagaaagaaaagagaggaggaggaggaggagAAAGTAAATGCCACGATGAGGAAGGGCTCATCCCAGCACTCATCAGATGATCTAGGAAACATGATGGATGAACCATCTCTTGACCAAACAAAGACCATAATTGATATTATCCCACCAAATGATGCAAAAGCACCAAGGGAGGTGAGAGCGGATGATGTGCTGCTTGAAGATCTGGAATGTAGTCTATGTTACAGATTATTTTTCCACCCGGTCAGCACTCCTTGCGGTCATGTGTTCTGTCGTAGCTGCTTATATCGTTGCCTTGACTACAGTAAAGAGTGTCCGCTATGTAAAGGATGCTTGGTCTTCTTTTTGTCTGAAAGATACCAGGCTGAAACACATGCCCTTGGCCACATTCTTCGAAAATATCTTCCAGAAGCCTTTAGGGAGCGTGAGACAAAACACTATGCAGAATTAAGAGAGGTTTCCAGAAATTCACAGATGGAGGGAAGTGTCATCCCGATCTTTGTGTGCACCCAGGCTTTCCCCAACGTTCCATGTCCTCTTCATGTGTTTGAACCACGGTACCGTCTTATGATTCGTCAATGCGTGGAGTCAGGATCCAGACAATTTGGAATGTGTATTCCATCCACAACAAATACTTTCAGTGACACTGGTGTAATGCTGCAAGTGCGAGAAGTTCGGCACCTGCCGGATGGGAGAGCCATTGTGGATACAATTGGTGGTAGAAGATTTAAGGTGTTAGAACGAGGAATGACAGATGGCTACCACACTGCAAAATTTAAGTTTAAACAAGATGTACCAGAAGAAGGTGAGGAATATGAGAGATTGATTCAACTGAACAACAGCGTGTACATGCTAGCAAAGCGGTGGTTTGAGAACCTCATGCTTGTCCATCGTATTCGTATTGAAGAACACTTTGGGAAGATGCCGGACAATGAAGCCGCTGTGCAGGAATGCCCAGATGGACCTAACTGGTTATGGTGGGTGCTGGCTATTCTTCCTCTTGATCCTCCCACCCAAGGGATCATTGTAGCAAAGGACAGTCTCAAACAGCGTTTGCAGAGCATCCAACAGGTCTTGACCAGAATCATGATTCCTGGATCATGA

Transcript

Chiridota_g18955

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 activity RING\|U-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF02190	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan
PF13923	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR003111	Domain	Lon protease, N-terminal domain	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015947	Homologous_superfamily	PUA-like superfamily	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR018957	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR046336	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23327	RING FINGER PROTEIN 127	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-