Gene detail

Detailed information of Chiridota_g18476 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g18476	UBIQUITIN-PROTEIN LIGASE E3C	chr_10	10657425	10687338	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g18476

ATGAATGCTTTCTGTAAGGTGCTTCATAACTCTTCGGTATTAAATATACAGTGTACACATCTGctgagtggacttgaacaagtgacagtaaagtgtcttgttcaaggacacaatgcatccgtcgtcgtggcatacgagcaagactcgttaaactctgagccacttcacctctTTAGCTCACAGTACTGTacaTTTGACCAAGGCTGTTTACCTAGAGTAAGGGTAGACTCAGACAACAGTTCTAGACAGTCTGCTGAGGCACCTCCAGAAATGAAAAGAGCAGCTGCCAGAGGTCTTATTCATCGGTACTTCTACCAACTCATCGATGGTTGCGGTAATCCAGCATGCACCAATGATAACTGCGCCTCCAGCAAGAAACTGCCAAAACCGCTCACCCGCAATGAAGCCGCAGCAAAGGCTCTGGAACTCGTAAAACAGAAAGCCACGCTATGTGAACCTGTCTCCAGCAAGCACTTGCGACCCTCACAAGGTGATGGCGCAACATCGCAAAAGAAAACCCAAGTTACCACTGCATTGAAGTCAGATGATAAGAAGAAAGATGCAAGTGATCTTGAAGAAATCTCTTTTCTGACGGAGGAAAAGGTATATGAGCTAATTGATTTCTCCAAAAAGAACAATAATTTTTCTCCGTTAGTGCGAGTAATTGGGAGAGTTTTTTCCAACTGGCAAGCCCTGAATGTGAGCTTCTTGAAGCGACCGTCAAAGAATCTTGCTGCAACATCAAAGGAACCGGAAATGGTTCCTGAGATGAAACTAACAGACAAGGAGAAACAGCAGGCAGATTGTGATGAAAAAGAGACGGATGAAAGTGAGAAGAAGAAGGCTTTAGGTAAATCGTGTAAGTGTAAGTCATTAAAAGTGAACATGCAAGTAGATGTGGAATCAATCCGTAGAACTTACAAAGCGCTGTACAGCTTGGAGGAAGAACGAATCGAAAATGCACTCCATAATGCCATTTTGTCTCTATCACAGATGGCAGAAGTAGACATTCGCTGGCATCCTGAGTTTCAACACAATCCAAACTATTTAAACTTTTTTGTCATTATCATGGAAAATCACATGTTGCAAAGTCCGGAGAATGTTCAACAATCCTTTCCTAGTATTTGCAAAGCTATGTCGATGCTACCTTTGAAGGCACAAGCTTCATTGGTGCAATTCTGGAGCACATTTCCAGCTCAAAATCTTCAAAAGAAACTAGAGGATCTACAACAACTGATAACATTTAAAGTTCTTACTTGGCAGATGCATTCTTTTCCCAATCGTATGCATCTTAACAGTGATACCGATGTCACAAGTGCGACTAAGTGCCTGAAGCTGATTTATTATGCTTCTATCCTTGGTGGTGAGATGGAGTTTGAGAACAAAGCGGACCCAAAATTGGAACACCTAACACTGCAGCAGCTCCTGGAGGCTCCCAGTTCAAGAGCAGAAAGCTCTGGAAATAACAAGGAGGATCCTTTAGCAAAGGAAATTGGTATTCACATTTTGGATAGTCGACGCCCGCTTGTCCCTTTTGAAGAATTTTATAACGAACCACTAAGCGACCACCTTGAAATAGATCATGACTTTACTATGTACAAGAAGGAATCAGAAAtgaatttttcctttttgaattttccttttATCTTAACGCCATCAACCAAAAGCATGGGGCTTTTTTATGACAATCGTATACGAATGTTTGAGGAACAAAGACTCACTGTGTTGAATAGTCTAATCCAAGGTGAGCAGTACAGCCCCTACCTGAAGCTCAAGGTTCATAGAGATCGGGTTGTGGATGATGCCTTAGTAAGGCTAGAGATGGTTGCCCTTGACAACCCTTCAGATTTGAAGAAGCAACTCTACGTGGAGTTTGAAGGGGAGCAAGGCGTGGATGAAGGTGGTGTGTCCAAAGAATTCTTTCAGTTAGTGGTGGAAGAGATATTCAACCCTGATATTGGTATGTTTATCCTCAATCCAGACACCAGTTGCTATTGGTTCAACCCCACTTCATTTGAATCAGACCGACAGTTTACTTTGATTGGCATTATCCTAGGTCTAGCTATCTACAACAACATAATCCTGGATGCAAACTTTCCTATGGTCCTTTACAGAAAGCTCATGGGTAGAAAGGGGACGCTCAATGATCTGGCTACCACACATCCTATATTACATAGCAGCCTCGAATCTGTCTTGGAGTACATTGGAGATGTGGAAGAAACGTTTTTCCTCAACTTTTTGATCAGTTACACTGATGTGTTTGGTGCAACTGTCACGCACAGCCTGAAGAAAGATGGGGAGAATATCTCTGTGACCAACAAGAACCGACACGAGTATGCTGACCTGTATGCTGACTGCATCCTGAACAAGCTTGTTGAGAGACAGTTTGGAGAATTCAAACGAGGTTTTGACATGGTCACCAGCGAATCACCGCTCAAGTACTGGTTCCTGCCCAAAGAGCTTGAGCTACTAGTGTGTGGCAGCAGGAACGTTGACTTTGAAGCCCTTGAAGAGACCACAGAGTATGATGGGGGTTACACACGTGAGAGCCAGGTCATCAAGTACTTCTGGGAGGTGGCACACGGCCTTGATGAAGAACAGAAGAAACAACTGCTTATGTTTACAACTGGTAGCGACAGAGTGCCTGTTGGGGGACTTGCCAAACTCAGATTGATCATCGCCAAAAATGGACCTGACTCAGACAGATTGCCATCATCACACACTTGTTTCAATGTACTGCTTCTCCCAGAGTATTCTAGCAAAGAAAAGCTCATGGAACGTCTCTTAAAAGCAATCACACATGCAAAAGGATTCGGAATGCTGTGA

Transcript

Chiridota_g18476

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity\|HECT

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan
PF16558	AZUL	Amino-terminal Zinc-binding domain of ubiquitin ligase E3A	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569	Domain	HECT domain	Interproscan
IPR032353	Domain	Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain	Interproscan
IPR035983	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR042556	Homologous_superfamily	Ubiquitin-protein ligase E3A, N-terminal zinc-binding domain superfamily	Interproscan
IPR044611	Family	Ubiquitin-protein ligase E3A/B/C-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45700	UBIQUITIN-PROTEIN LIGASE E3C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0004842	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-