Gene detail

Detailed information of Chiridota_g16025 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g16025	RIBONUCLEASE H1	chr_8	37770674	37795360	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g16025

ATGAGTGAATCTGTCACGGAAAGCGCAGAGACAGATTTCAGAGATGAAGATTCTGTAGAGGAAGACAGTTCTGAAACTCGGACTGATTCAGGAGGTACCCCTACTGATGTGCTGAACCTGATAAAGGCTGCGAAAGTTCTAGGAGCCATTTCCATAGACCTTAGCCAGAAACGTCTTATTGAACTTCCACCTGAATTGTATGAACTGGAAAATATTGAGTTTTTGTACTTAGAGGGGAACTCCTTACAGCATGTGTCAGATGAGCTTTTCCAGACATTAATAAATCTAAAGTGGTTAGATCTCAGATATAATCAAATCCAGAAGTTGCCACCTTCAATTGGACAACACAGATGCCTAAAAAATTTGCTGCTAGAAGGAAACCATCTCGTAGAACTACCCCCAGAACTTGGTCTGGTTAAAACCATAACTGGATTGAATCTGAGGAATAACCCCCTTGAATTTCCACCATCTAGAGTCATTGCAGAAGGTGTCAAGGATGTTCTCAGGTATTTACGAGATGCTCTGGCGATCAAAGGTAAAAGGTTCAAATCAGCAGATCTAAGGATTGAAGATCTCAATCTAAGCGATTCTGGTCAGTTGTCATCGGAGAGTGACTCTGATTATGCACTCACTAAACATTCTGAGACCCAAGAAGCTAAGAACCAATCATTGAATTCTGCCAGTCGTCAGTCAGCTCACTCTGCGGCAAGCAACACGTCAGACATTGAGTTTCCACGACCCAAGTCTGTCTCCCTTCATAAACACCTGACGTATGAAGAATATCGACAGAAGCAATATGAGAAGTTCAAAAGAGCTGGAGCTTTAGGTGTTATTGGCAAAGAAAAGAGAAAGAAAAAGAAGAAGAGAAAGGTGAAATCACCAGGGCCAAACTATATGGACGCGATCGAGTCACGGTTCATGGAAGAAAAGAGGATTGCCAGGTTGAAGGAACTGCAGGAGAAGCAGGCTCTCACTGAACAAAGGATGAAGGACCAGAGGCTGCTGGACAACTGGCGGGATGAGAGCCGAGAGATGCAGAGAAAGCATTACATCCGAGCTGTCAAGAACAAACAAGCAACAAATGGTGGCGTCTATAGGAGTCAAAATCATCGTTTTGCTGATCCACTGAAGATGCCTTATGACATAGACCCAAATTTCATGCAAGTTGTCAGCAAAGAAGAGCGAATAAGGTTGGAAATCAAACAGGAACATGAAAGACTGAAACAGAGGGACCCTGAATACCGGCAAACAGTCGAGAATGCAAAACTTGAGAGAGACAAACACTTGATGGCGAAGATCAAAAGCCACACCCAGCGGGTTCAGGAGAGGAAGAACAGACCCAGGGGAAACCCCCGAGAGGAAATGGAGGCTGCAAAGAGGGACCTGGAATTGatcaaagaccaactctcaaattacacctccatctatactgatggctccaaggaaggcaacaagacagctgctgctgccgtcatccaagacatcaccctcagtagcagacttcccgactactcatccatcttttcagccgaggctaaggccattctccttgccctcaactttattgagtactctccactcagccactttgccattttctgcgactcaaaggctgttcttacttctttactcaatcttaaatgggataacctcacatgccacctcctcctccggaaactcctttctcccaccctctgcaggaaaagtgttcttttcttctggatacccagccatgttggcatccctggcaatgacagggctgatgcagccgctaagcttgccctcaacctcctccctactccttttcccaaaaccctctctgacatcaaaccgcttatcgctacccttgttcgtgaccgctggcaaacctcatggaactcccaaattgataacaaactccatgtcatccagcccacaattccgatcaaatccaccatcaacaacctctctcgtatcgacaacgttcatattacccgtcttagaattggtcacacccacctcactcactcccacctccttattggctccccccagtccctctgcaacaattgccactgcaccctcacaatccatcacgttctccttgcttgccccctgtacaaccttcccagagcttccctcactccccacaactcaattgctgagttcttccagaaaaatcctccagataaaattatctccttccttcatcatgcttccctctgcaactatatttaa

Transcript

Chiridota_g16025

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050092	Family	Ribonuclease H	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10642	RIBONUCLEASE H1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043137	Biological Process	DNA replication, removal of RNA primer	Interproscan
GO:0090502	Biological Process	obsolete RNA phosphodiester bond hydrolysis, endonucleolytic	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-