Gene detail

Detailed information of Chiridota_g1591 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g1591	SPHINGOMYELINASE FAMILY MEMBER	chr_2	2581954	2586623	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g1591

atgtccagaaatctgcccgagcacggcttgcatgtttgcccgtttgtgcagAAAAAACAAACAAATTATACAAATTTGGAAGATGTTTTTCAAGCCACCAAAGCTGGATACTCTTATCGACTTTGTCAACATTGCACATACCTATTATCACATGGGAAAAATGATGATCCTGAGTGTGAAGCGGACGAGGGTCACTGTGCTCGTTTTGGCTTAGATTACCTGTGCCAAGAGAACATCACTGACCCTGGAACTGACTCCCCTTTGAATGTTTCATGTCCAACCGGAAAGAAGGCTTTGTGTGCTTTCCCACCATTACCTACAAAGCTGATAGATACTCCTGCAACATCTCTTAAAGTATTGGCTTATAACATCTGGGAATTACGGTACCTGTATTACCAGACGGGTCAACGTGAACGAACTTGTAGAATCATCCCGGAGATTCTTAGACGACACCCTGACTTGGATGTGATCATATTCAACGAGGCATTTATAGGCGGCTGCTTTGCCGGATACAATTTTACCACAGGTATTAATCGCTTGGACTATCGAGATATTCTCACATTCTATGGATTCGATTTTTGTACAAGTAATGTTGGTGATATACCTTCTCTCCGCAAATTTGAAAACGGTGGTGTATTCATCGCATCAAGATGGCCGATTGTAAGAGAGGAAGAAGTTGTGTATGAGTCGTCCACATTATATACGGCGGACGATCTATCACAAAAGGGTGCAATGTACGCTAAAATTCAGAAAACCGTCAACTCCATTCGAAGAACATATCATGTACTGGGCACACATCTTCAAGCGACAGGGAGGGCTGACTCGGATGATGTTCGAAGGAATCAAAGCATTGAAATGCACAACTTAATGTTCCGCATGAACGTACCTAACGACGAAGCGGCTATTTTTGGAGGTGACTTGAATGCAGATCGAAAAACTCAACTAAGTGCGGACATACTCGATAATCTCCATTCATCCAATCCACCCATTGTAGGTGAATTGGAATATACATACGACAGGGCTACTAACGATCTCTTTGATGGTTTCGGGCCTGGCAGATGGATAGACTACGTTCTGTACAGCAATGATCATTTACAGCCAACAAATTCGTCCACGATGGTCGTCCGTCCACACACAGACACTCCATTTGAAATTTGTTTGGACAGTGTAAAGGTGTCAACTGGTCCTGTGTATCCAGAAAGTCCGCGATGCCGTAAGCCACGGAATGTGACCGACTTAGCTGATCATTTCGCAGTCATAAGCAGTTTCGAATTTAACGTTGAAAGTATAGGAATTGGCTACAATCAGAGTCGTTGGTTGCAAGGTCCACAATTCCTGTTGCAAAAACCGGAAAGTTGCCTAGTTTTAGTCCCAGCTGTGGATGATAGTTCCCAAGGTAGCACATCTGACGTAGATATTGATCCAGAGGTCAAGAGAGTTGGTCAGGCTCAGTTGATAAATTGTCTGGTGGAACTGAAGGAGTTGGCTGAAGTTGATATTAAGCAGGCTGAGGTTggtgttgactattttggaccattgtttgttaagttcggtagaagtcatgtcaagcggtatggatgtatttgtacgtgtttggctacacgtgctgtccagatagaaatattacactcaatggatacaagttcgttcattaatgcCTCCCAGgggattgcttggtatttcaaccctcccacagcaagtcacatgggggatgtatgggaaagaataatcaggtctatccgtcgggttatgaaggctcttcttggcaaacagattgtttctgatgaaattttgttaacagttatggcagaagttgagtcaattcttaattccaggcctctaacacagataatttcagacataaaagacgatgagcctctcaccccgaaccacttgctacttcttcaaaccaatactgatttcccacccggtgttttcgctcatgcagataactatgttaaacgaagtatggacaggcaacggattacatctctgctggctctagatctttccgccgcctttgatacagtagactatgacattatactgaagatattgcacaaccgatttggaatagatgggaaggcattacaatggtttcataactatctaaatagaataaaattcaaagtcaaaatagggcaatctctttctgaggagatcagtcttccattctccgtgcctcaaggcagttgtgcaggcccggttctgtacaatctttatgcaagcaatgtacaaaattataccagttcaaatattcaacatgctagagagataattgataggatacgctga

Transcript

Chiridota_g1591

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF03372	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR017766	Family	Sphingomyelinase C/phospholipase C	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR038772	Family	Sphingomyelinase C/Sphingomyelin phosphodiesterase 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16320	SPHINGOMYELINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004620	Molecular Function	phospholipase activity	Interproscan
GO:0004767	Molecular Function	sphingomyelin phosphodiesterase activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008081	Molecular Function	phosphoric diester hydrolase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-