Gene detail

Detailed information of Chiridota_g1551 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g1551	N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE	chr_2	552909	687868	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g1551

atgagttttggttgccccgagcgtccggacaggcgatttgtcgaacgctGtctccaagaccacttggggcggaaccgccatgctctcctcaaaatcttcagactcaccatttgtgccaagcttgactacggcaatattgtctactgtgtcgctcacaactcatacttcaaccacatcaacaccatccaaaatgaagccctcagacctcctccatctcggcatcagctccgccactcttggcaccttcttctggcccacttttcctccttgggccaccccctcccttttatccacctgggcctctccactcatcacaaaacccaaacccaccctaacctcttcatcaatctccacaaccaaatcaaagaccaactctcaaactacacctccatctatactgatggctccaaggaaggtgacaagacagctgctgctgccgtcatccagacatcaccctcggtagcagactttcctacttactactcgtccatcttttcagccgaggcaaaggccatcctcctagccctcaacttcattgagtactctccgctcagccactttgttatcttctccgactccaaggctgttcttacttctttacccaatcttaaatgggataacttcacatcccaccgcctcctccggaacctcctttcgcccaccctctgcaggaaaagtattcttttcttctggatacccagccatgctggcatccctggcaatgacagggctgatgcagctgctaagcttgccctcaacctccccctaccccatttcccaaaaccctctctgacatcaaaccgcttatcgcttcccttgttcgtgaccgctggcaaatctcatgggactcccaaattgataaccaaactccacgtcaaccgccccaccattccgattaaacccaccatcaacaacctctctcgtgtcgacaacattcatattacctGTGATAAACAGCCACATGGATTAGACAAACAAACTGAACAAGATAGTCAAGTTTGTGAGTTTACAAGAGAAGTTCAAAGCTCAAGTGACATCAATGGTGAGATGAACTTATATGATGAGCCTGAAGTTAACTTGGGAAAACACTGGACAGAAAGTAGTTTTCAGTTGCGGTTTGCAGGTCATGAGCATTATACAGGCAAAATGGCTTCCACGGATGATAAGCGTGTCCTTCTTATTGTGCTGCTAATTGTTGCTGCAGCTGTAGGCATTGGACTTGGCGTGATTATTGGTTGGTTTTCTAAAGGTGACGGGAATGTTCCATGGTCAGCAGCCCTGGGAGAAGCAGATGACGATGTGACTCAAATGATCATTAATGAATTGAATGCTGACAGCATAAAGGAATTTCTCAGAGAATTTACTGATATTCCACATTTAGCAGGCACAAAAGCAGACAAAGACAATGCAGAATATGTCAGAAGCATGTGGGAGGAACAAGGACTGGACTCAGCCAGGATAATCCCTTACAACATACTCCTGTCTTATCCAGACGCAGCCAATCCTAATCTGGCAACCATATTGAATACAGATGAATCCGTCTTTTTTCAATCTGCCCCAGAAGAGGTGGAATTGGAGCAAGGAGATGGCCATCCTGATGCTGTTACTCCTTTTAATGCATACTCACCTGCAGGAGTTGTTACAggtgatctggtGTACGTGAATTACGCTCGAGTTGAAGACTTTCATCAACTTGAGAGAGACCTTAACATCAGCGTTGCAGGCAAGATTGTACTTGCCCGATATGGAAAGATATTCAGAGGTGACAAGGAGTACCAAGCTAGCCAGTTTGGAGCAATTGGCATGATCTTGTATTCTGATCCAAAGGATTATGCTGTGGAGGGTAACTCCAGGGTGTACCCTGACACATGGTACCTCCCAGGATCTGGTATTCAGAGGGGTACCCTGTTTCGTGGTAATGGTGATCCACTTACTCCAGCCTATCCATCCACAGATGTTGCTTACAGGGAGAAGGAGGAAAATGTTTCTCTCCCCATGCTACCGGTGCAGCCAATAGGATATGACGATGCCAAACATTTCCTTCAAGAACTTGATGGTGATCTTGTTCCAGAGGGCTGGTCAGGTGCTATTACTGGTGTTGAGTATAGGATTGGTCAAGGACTGAAAAATGGCAGGAAAGTGAAACTGGAGGTATATAATGTAAGAGAAAGACGGACAACCCATAATGTGATTGGCATTATAAAAGGAAGCGTAGAGCCAGATCGCTATGTGGTCATCGGCAACCATCGTGATGCATGGGTGTTTGGTGCTGTTGATCCCAGCAGTGGTACAGCTGTTATGATGGAGCTGTCCAGGGTGTTTGGCAAACTGGTAAAAAAAAATAAATGGCGGCCTCGTAGGTCCATCTTGTTTTGTTCGTGGGGAGCAGAGGAGTATGGTTTAATAGGAtcaactgaatggattgagGAGTTTGCCAAGACTGTTGGTGAGAGGACGTTGGCATACCTCAATGTGGATATTTCAGTTCAAGGGAATTACACCTTGAGAGTGAAGGCAACACCAAGTCTCTACCAGACCACATTTGATGCCACTATGAGGGTGCCTGATGCTCCATTTACTGGACACTCGGAAACAATCTATGACACTTGGCTCCAAAGAAATAAGGATTATGACGAAGATATTCCATACATCAGCAATGTTGGTTCGGGTAGTGACTACGCCACCTTCTTAAATCGTTACGGTATTCCAGCGGTAGATCTGAGATACACATATAATGATAGTCTTTCGATCTCCTCCTACCCTTTGTATCACTCCATGTACGAGACATTCTACTTAGTCTCAGAAATAATGGATCCATCGTTTGAATATCATCTTGCTGTCAGTAGAGTGTGGGGAGAAATAGCACGCAACTTAGCAGACTCGTTGATTATCCCCATGTACTGCACAGATTATGCAAAGAAGATAAAGAAGTCCATTAGTGTCCTGAAAGACACTTATTCATCAAGCATGGCGGAGCATGGCATAACATTTGatgcaattgatacagcggtgcAAAATTTTGAAGCAGCCACCGTAGAATTTCAGGATCGGGTCAATTCTATTGATAAAACAGATCCATTTGCTGTGAGGAAAGTGAATGATCAAATCATGCTTCTAGAGAGAGCTTTTATTGACCCCTTGGGACTTCCAGATCGACCACTTGTAAGcttctaccaggcaggttgttatgctgttcggcctttttctgctatccttttcaagtcttctgaggtaagacaaggtagccatggggccgggaattcttcggttcgtctcgcaggactttcccattaa

Transcript

Chiridota_g1551

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00075	RNase_H	RNase H	Domain	Interproscan
PF02225	PA	PA domain	Family	Interproscan
PF04253	TFR_dimer	Transferrin receptor-like dimerisation domain	Domain	Interproscan
PF04389	Peptidase_M28	Peptidase family M28	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR003137	Domain	PA domain	Interproscan
IPR007365	Domain	Transferrin receptor-like, dimerisation domain	Interproscan
IPR007484	Domain	Peptidase M28	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036757	Homologous_superfamily	Transferrin receptor-like, dimerisation domain superfamily	Interproscan
IPR039373	Family	Transferrin receptor protein 1/Glutamate carboxypeptidase 2-like	Interproscan
IPR046450	Homologous_superfamily	PA domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10404	N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004180	Molecular Function	carboxypeptidase activity	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-