Gene detail

Detailed information of Chiridota_g14634 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g14634	THAP DOMAIN-CONTAINING PROTEIN 6	chr_7	47256699	47261699	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g14634

ATGGAAGGTCACAATCAACAGCTGCAGAATCTGTGTCGGTTGTGTGGATCCCGAGCAGAGAACAAGAATCTTAGCCCAGTTCAAGATTTTTCAAGGGATATTTTCAATGCTTTAAGTATTGACATCACAGCAGATGATGATAACATACACCCACGAAAATTGTGTACTAAATGCAGGCTGAAAATTTCACGGTGGAAAAAGATAAGAGCGAAGGCAAAGGCCAATGCTCGTTCTAGTCTAAAAATCACAAGTATGGAACTTTTCCAGTTTGTTCCACATGGCGATGATTGTGTGATTTGTGGTGAAGAACAATGGAGTTATGACATTCTGTTGGAATTATGTAAAGAATTTGGGTTCGTGACATCCTTGAAGAAAGATAAACTCATAGCTGTAATTTTGGATGATGAAAGTAGAGTAGTCCTGAAAAGACTGGTTTTTGAAAACAATGATGTCTGCTGTTATGTTTTAGGAAGAAAACTGAATACATCATTTAACAGACAAAGTGATGCCATTAACTTTTTGCACTCTCTTGAAATTTGTACTGGAAATTTCGGATTTTCCATCCTGAATGAAAGACATCAGTATATACCGCTTAAAGGAAAGCAGGGTGAATTTGTTGCTAAGGTAGAACCATTCTATCCAGTTGGTGTTTTCCTGAAAGACGAGTGCACCATTAGACATGTGAAGTGTACCTTCATTTCCAGAAAAACTGCAACAAATTCTCTCTCCTTATGTGATGTGTGCTCACAATATCGATCAAGCTTATTTTCAAAAGAAAATCTTGCCAAGCAGCCACAATCTTCTACTTCTACCATCCACAAATCAAGGTCTCTTCTCAGTGCTGATGAACTCCAGCAGCGAGTAACTGATTTGCAGAGAGAGAAAAGAAACATTGCGCAAACAAATGTCAGGTTGCGAGATAAAGTTTCAAAATTTCTTGAAAGTGAGACAGTTGAAGTAAATGACTCTGATGACGTCATTTTGGAACAACTTCTTCACGATAGTCAAGTTGAGCTTAGCAGCAACCTCTCTCCAAACACGTATTGTGATCTACTGTGGCAGCAGCAAATGAAAGCACGCTCGCTGAAAAGCAAAAAGCAAATGCGTTGGCACCCTGCCCTTATTCGTTGGTCAATCGCAATACATACAAAATCTGCAGCTGCGTATAATATTGTTCGTAACACCGGCTTCCTTGATCTACCTCATCCAAATACTTTGTTTAAGTACACTCACTTCACAAATCCATCAACAGGGCTGAATGAAGATCTCCTTTTGAAATTTGTGAAAGATTTTAATCTGGACAGCTTGAAAGAGCATGAAAAATTTGTATCTCTTGTTTTGGACGAAATGAAAGTTAAGTCTGGACTCGCATTCTCCCGTAGCACCGGGAAACTTGTTGGATTTACGGAAGTAGGAAGCTTGGCCGAGGAGATGGCCAATTTTGAATTGCGGTGTACCACCGACTCATCAGAGGGACCGGCCTTGGCATCTCACGTTTTGCTATTCATGGCCAGAGGCATCACATCCAAGTTTAAGTTTCCTGTCGCATATTTTGCCACGACAAGTGCTACTGGGAGTGAATTGTACCAATTGGCCATAGAATGTGTACGTGGGCTAAAGTTGATTGGGCTTTCTGTGCTTAATATCACATCAGATGGAGCCTCCTCCAACAGAAAGTTGTATGAGATAATGGGAGGAAAAGGAACCTCAAACCTGGAACCAGCATATTGCTGCAGAAATTGCTTTGAGGAAAAGGAGCAGCTGTATTTCATTTGCGACCCACCCCATCTGCTGAAGTGTCTTCGCAACAACCTAGAGAATTCAAACTGGAATAAGAAGACTAGGAATCTTGTTCTGGATGGCAAGAAGGTCCAGTGGACTCAGTTGTTGGAACTTTATGAATGGGATGTTGGGCTCCACAGGAATACGCCCGGTCTACGGCTTCTCCCAAAGCTGAGGTATGAACACCTCCATTTGACACCATCCCTGCGAATGAAGGTATCCTTAGCTGCACAGGTACTGTCTAAGAGCGTTGCAAATGCCCTTGAGCTTTCAAAGGTACCAGGTCTGTCATCAACGATTAAATTCATCACAATGGTCAACAAGTTTTTTGACTGCATGAATGTATCCAACAGGTATCAGGGACAGCGCCAAAGAAATGACAACCTTCTCCCGTATTGCAGCATCGAAGACCCGCGATTTAAGTGGCTGAGGGAAGAATATTTGGTGTTTCTTCAGAAGTGGGCCCATGAAGCAGATGAGATTGCAGATCTGACAAAGACAGAAAGGAGCAAACTCTGTTTGAGTGTCCCAACAATGAGTGGGTGTTATATTACAGtgaattcctttgttgagatagcaaaaaagatgctttctatggatggagttgagtatgtactgagcgataaactgaaccaagattcggtggaagagttttttggcaagcagcgagcagctggcggacatcgggataatcccagtgtggagcagtttgggcatAGTTTTCTCCGCAATGTTGTAGCTGGCAGCTTTGCTACAGGATCTTCAAAGGGAAATGTTAAGCTCACATCACCTAGCTCAGAGAGTTTGTCCGATGAACCGCTTCCCAAACGAAAGAAACAGGCTAAAAGTTCAAAACAAAGCAGTGGCACTTAG

Transcript

Chiridota_g14634

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12560	RAG1_imp_bd	RAG1 importin binding	Family	Interproscan
PF21787	TNP-like_RNaseH_N	TNP-like, RNase H N-terminal domain	Domain	Interproscan
PF21788	TNP-like_GBD	TNP-like, GTP-binding insertion domain	Domain	Interproscan
PF21789	TNP-like_RNaseH_C	TNP-like, RNase H C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012934	Domain	Zinc finger, AD-type	Interproscan
IPR035714	Domain	RAG1 importin-binding	Interproscan
IPR048365	Domain	Transposable element P transposase-like, RNase H domain, N-terminal	Interproscan
IPR048366	Domain	Transposable element P transposase-like, GTP-binding insertion domain	Interproscan
IPR048367	Domain	Transposable element P transposase-like, RNase H, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47577	THAP DOMAIN-CONTAINING PROTEIN 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-