Gene detail

Detailed information of Chiridota_g1137 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g1137	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	chr_1	67048469	67070739	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g1137

ATGGATGCAGAAGAGTATAGAAAGCGAGGTAAAGAAATGGTAGATTACATCGCGGACTACCTAACCAATATTAGAGAAAGGCGCATTTTCCCGGATGTAGAACCCGGCTATATGCGTGCTCTCCAACCCGATCATCCCCCTGAAGATGGTGAGACGTGGGAGGACATATTTAAAGACATAGAGAGAGTCGTTATGCCTGGAGTCACACATTGGCAAAGTCCTCATATGCACGCATATTTCCCTGCGCTCAACAGTTACCCATCAATGCTTGGAGATATGTTGGCTGATGCAATTAACTGCCTTGGATTTACGTGGGCTTCAAGCCCAGCATGCACTGAGCTGGAAAAGATAGTAATGGATTGGCTTGCTGAAATGCTAGACTTACCTTCGTTCTTTTACCACCATAAAACAGAGAGCAAAGGAGGTGGTGTTATTCAGGGTACTTTAAGTGAAGCTACATTGGTCGCAATGCTGTCTGCCCGAAACAATGTCATCAATAGATACAGAGAACAAAACTTGGATTTGGATGAAGTTGAAGATGGAGAAATTTGTGCGAAGCTTGTTGCTTATTGCTCGGATCAGGCGCATTCTTCCATTGAGAAAAACAGTTTAATCACTATGGTGGCCCTGCGTCACCTACCAACAGATGACGATATGTCTTTGAGGGGAGATGTGCTGGAAGAGGCGATTAAGGCTGATTTGAAGCAAGGGCTCATTCCTTTTTTCGTGTGTGCAACGCTTGGTACAACAGGAGTGTGTGCGTTTGACAACCTTGACGAAATTGGACAAGTTTGTAACTTAAACAAAGTGTGGCTTCACGTCGATGCAGCTTATGCTGGCAGTGCATTTATCTGTCCAGAATTCAGACATTTCATGAAGGGAATTACGCGCGTTCAGTCTTTTGCATTCAACCCAAGTAAATGGCTGATGGTCCACTTTGACTGCACTGCGTTTTGGGTCAAAGATAGTGAAGCTTTAGAGAACGCATTTTGTGTCAACCCGCTGTATTTACGTCATCACAGACAGGGAGCAGCAATTGACTTTATGCACTGGCAAATTCCTCTCAGTCGAAGGTTTCGGTCTTTGAAGCTGTGGTTTGTCCTGAGGTCATATGGAGTGAAAGGATTACAAGCTCATATACGAAAGGGAGTACAACATGCTAAGTTCTTCGAGAGTCTGGTGAAGAGAGCGCCTGGATTTGAAATCATATCAGAGAGGCATTTGGGACTAGTATGCTTCCGATTAAAGGGTCCAAACAGCTTGACAGAAGAACTTTTAAGACTTCTAAACGCCACTGGGAAGATGTACATGGTCCCTGCATCGGTGAAGGGTTCGTACATAATCAGGTTTACGGTGGCGTCGACACACACGAAGGAAGAAGATCTGATTGAAGACTGGGAGCTGATAAAAGCATTAGGAATAGGACTACTAAATGGCCGAAAGTCTCCAATCTCAGGCCGGAATGCTTCTTGGCCAGTATCAGGGAGCGCAGATAAGACATCAAATACAAAGGATAAGGACACAAAGGATAATATTGGTGAACATGAGAAAGCATCTGAAACCCGAAAGAGAAAGTTAAGTCGACGTGCAATGTCAGAAGATACTTTTAATTATGGGTTCCCCTTCAATGCGTACTACAGCTTGGAAAAGTATACCAAAGCGCAGCTCGATGCTTTTCCACCAACGGATGAGGTTCAGGAGGAAGGAGAGGATGATGTGTTCGCGCCGGAGGGAAAAACATCGCTACAGGAAAAGCATGTAACAACAGATGTGAACCGCAACGGAAAACAAATCTTGAACAATGACACTTTGTTAGTAAATGATTGTCTGCATACTGAGCATATTGCTGGTAAAGGGGCGCAAAATGGTGGGACCGAGACACCTGAGGCGAGGCACATCTTTGTTTTGGAAGAAAAGCATACACATAATGGAATCAACACTAAGAGTGACGAAAATTCCAGGATTTTCTCTGGGGTAGTAGAGGGTCTTCAAAATATGAAATTATGTCCCCCAAAGGTTTCGAATGGTCCACAATTGAATGTGAAAGCAGTTACAAGTAAAGGTCGCTTTGGTTCACAATCTCTCACTAAAGAGGGTGCTTACAATGGCGTTGTAAACATCTGTCACTACAAAGATGATGACAAATTAAATGGTGATGAGAAATAA

Transcript

Chiridota_g1137

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00282	Pyridoxal_deC	Pyridoxal-dependent decarboxylase conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002129	Family	Pyridoxal phosphate-dependent decarboxylase	Interproscan
IPR010977	Family	Aromatic-L-amino-acid decarboxylase	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR021115	Binding_site	Pyridoxal-phosphate binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11999	GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001694	Biological Process	histamine biosynthetic process	Interproscan
GO:0004398	Molecular Function	histidine decarboxylase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006520	Biological Process	amino acid metabolic process	Interproscan
GO:0006548	Biological Process	L-histidine catabolic process	Interproscan
GO:0016830	Molecular Function	carbon-carbon lyase activity	Interproscan
GO:0016831	Molecular Function	carboxy-lyase activity	Interproscan
GO:0019752	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-