Gene detail

Detailed information of Chiridota_g11242 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g11242	RB1-INDUCIBLE COILED-COIL	chr_5	63357549	63386415	+

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g11242

atgtgtgaaagaattggatggcatgtgggacagggggtgggatggcatgtggatagagtgTTGAAGGTGCAAGTTAAGACACACAATCCCATCTTCTTGTTTAGCAAGGAGACCATTGAAGCAGCAGGTCCTCTAACGTTCCATAATATATCCGACGCACCTGAAGATAAGTTACAGGTAGAGGGACTCAAGGACATGCCACCCAGTTACAGTGCTGTTGTAGCCAGGACTCAGTTAGCATTGCAATTTCATGATGTCGCCAAAGAAAAGTTAAAGCGGTGTGAGGAACTTGTGCATGATCAGCACCTACAGCAGCAAGGGTGGATGGCAGTTGTTGCCAATCTAGATGACATCACAAGTGCTTTCAAACAGAGGGCTGAGCAGTTTCATAAAAATATGAGTGACTTTCTAAGAGAGCGCCCCCTGTTGCAAGATCGAGTATCACAATTTACAAGTATTCTTAGTTTGCTGGAAAAGACTCCATTACTACCTTGTTTACGCCACATTGAAAGCTCTGAAGTCCAGGAAATTAGCTTGTTGCAATGGATCAGTAACCAGGACCAGAAGAGCACCTTGAATCAAATGGCCAACCAATGCAGTAAAGCCGTGGAGCAATTTACAGAGAGTGTACTGGAGAACCTGCACAAAGAGTGTGCCAAGTGTCTAGAGGCAGTGGATAAACCTAGCATGAAGGAAATCAAAGGGCTGGGGGAGAGGTTGTTTGGTCTGGAACAACTTCTTACAAGTGCCCAGAAGATACTCACAGATCAGGCTGAGATGGCTCAAGGCTTGGTGCAGAATCAGACACGGGTCAGTAACATAAACGATCCATCGGTGCTTCCAGACCTCTGTTCCAGCCATCAACAGCAGTTGGATGTAATGAACAAGAAACACTTGCAGCTGATTGAGATTTGTAGGAGATGTCAAGTTGCCAAGGAAGAACTTTGCCAAAACCTTCATGTTCGTCTCAGGTGGATTATGTATATAGAACAGCAGATCAGTGTTATCCACAATAAGATGGTTATATACCATGAAAATCTGAAACGGCTGAGGAAGAGGCTAGAGATTGTTCGCCAGGTTGTAACTGCACCTGAGGTGTATTCTAACACCTTGGTGGAAATTATACGAAGAAGAATCTATAACAAACAGTACCACCAGTGGTCAGAAACTATAAGTGAACAGAGCAGCTCCATCCACAAAGAAGAAGTTATAAGAAGAAAACGCATCACAGATCAGCTGCACCATCACTTTCTGAGTACGCTATTTCCTGGCATGGATGAAATACCTCCAACTTTTGCTACCAATCAACCTATGCAATATGACCTTCATCTTCCTCCAGTGAAGGAAGAGGACATTCTTCACCTTTTGCAAAAAGTCCCCGAATTGGCTCCCCATCTCAGACTACCTCAGGCTATATACTACGCATCTGTCATAGAATTGCCTTTAATAGAAGGTGCTAAAGAATATCAGGAAATTGAAACACAAACCTCCGTACCAGAAGCAGATTCCAACTGCAATGAAGCATTCCATGAATATGGAGGAGTTGCCTCCTATCCAGAGTACTATTCTGCTCCTGATCAACAAGGAAACCTCTTGTCCGACTGGGAAGGTGTCgtagaccattcagatggggtcatagtagactactcggatggggcaatagtggaccactcagatgggccgaaagaagaccattcagatgggTTAGTCCATGGAGACAAGGATAATGTGGGCCCTGATTACAATTTAATTGATATAGAGTATTCTCCAAGGGAAGGAAAAACACCATATGATGAATCAGGGGATCTTCTTCGTGTAGAAAGGGAAAATACAAGGTTATCCTTGAAAGCTAACTTGGATTCAGAATTGTGTCTGTCTTCCATGATGAATGAACCTTTTTACTCTGCTGTCGGAACGCCAATTGAAGGGAACATACCTTTCTTGTCTACCAAACCGGAAGATATGCAGACAACTACTTCTGAACTTGAAGATAAGATATTTAATTTAACCAAAAAGCTGGAGGAGATTGAAATGTCCAAGTCAGTCTTGGAATCTCAAAGCACTGAATCAGACAAACGGAATTTGGAAAAGCTACATCAGCTTCAGAAAATGTGTGAATTACGTCAAGAGAACATGGAAGGACTAAGGGCAAAACTGAGAACGTTTAAAGGAAATTTTCTTGTACAGATTAAAGAATTAAAGGGAGACCTCAGAGACATTAAGGAGGAAACCAGTCTTAGTCAAATTCCTGTCATCTCGTGGATGAAGGAAAATCATAATCGTGTTCTTAAAGTTTGTACAAATATACTGGAATCTCAGGAAGAAACGCATAAAGAAGTACTTTCCAATATGGAGACAAAATTTTTGAAAGACAAGCAGGATTTTGAGGGAAAATTACAAAACTCTAATTCAACAATTGAGAAAATATCAAGAAGCCTGACAGAATCCAAAGAGCACATGAAATCCTTGGAAGAGGTAAACATTACAAGACAGAAATCCCTTGAGTTTATTGAACTAGAATTGAAAGACAAAAAAGACTCATTAGAGAAATTGGAAGAAGTGGAGAAAGAAAGATTGGTTAAAATTGATAACCTAGAACATGAAGTTTCAAGGTGGAAATTAGTGTTGAAGGATAAAGATGAGGAAGTAGCTAAATTAATGAAGGAGCATGAGGAAAAGTTGAGACAGATGAATGAGGAACATGCTTATGAATTTGAGGAGTTTAAATCCTCTTTGAAGATGGAGTATGAGATGGAGGTCCAAGATTTAGAAGTGAAAGTTTGTGACAAGGAGGCAGAATTGGAAGAAGCACAGATAATGAAGGAGGCAGAACTGGCTGAACTGAGGAGGAAAATGGAGGTGGAGAAACTTGAAGCTATTGCATCAATGAGGAAAGAGGCTGAGAAAGAACACAAGGAGGAGAGGGAGAGGATGCAAAAGATAATGCAAGAAACGCAGTTGAGAGAGGTTTCAGAGCTTGCTAAGTCCAAGGAGATGCTTTTGGAGGTGATGTTGCAAGAGCAGAAAGATGCACTGGAAGAGGAGAAGAAACAGGCACTGGAAGAGATGAAGGAGACCTTGAGAAAAGAATCCTCTGAAGGGATGAATTTGCTCATCGCAGAACAGGAATCGGAGATTGACAGTCTGAAAACTGGGTATGACAGAAAAGTAAAGGAGTTGGAGAGAGAGCTAGCTGAGATGAAATCCAAACATAGTTTGGAGATGAACAAGCTTGGTGATAGTTTGGAGGAATCTGTCATGTCTGTCAGTCGGGGTTCagagatagagaaagagagagagCAGCATCAGAGGGAAATGCAGGAATTGAGAGATCTTCTGGAGCAACAGAACAAACATGCCATCGAAGCTACGAGAAGAGAATATGAACATAAACTTGAGAGGATCAGGCAGAGCATGAATCCAGCAGACCTTAAGAAGCTGAGCAGTGCAGAGAAGCAGGTGGCATTCAATGAAGCAATCTCCCGCATCACGGTAGAGAAGGATGAGGAGATTGCATGGCTAAAGCAAAGGGAAGCAGACTTAATGAAGGGCAAGGAAGAGCTAGAAGAGTCAATGGAAAACTTGCTGATTCAGAAAGGAGATGTTCTTAGTGAAGTACATGTCTTGGTGCGATCTGCGAGGCAGGCTGAGAAGGAGGCAAAGGACACCCTCGCTGAGAGGGAGGGGCAGCTTAGGCAACTGGAGTCTGAATTATCATCACTACCTCAAGCTAGTCCAGCAGAGCTCTTAGTTTCAAGTATGACTGGCTCATTGGAACCACCAGACTCTGCCAACAAACTCCGGGCCCTTCTGCAGTCCAAGGAACAAGAGTGCCACAGCCTAAAGAAACAATTGATGCATTTAAGAACGGCCCAAGGAGCACCAAGAGGGGACAAAGTTTGCATCAAGGATATTGGAGTTGGGGACTTGGTTCTTGTGAAATATGAGGAAGCTCATGAGAATTACATCATCTTTACTGTTGAAACCATGTGCTACTTTGTCCATTCTGAGTCTTTGCATGCCCTTGGCTTGAAGACAGTTTGGCCTACAGGGGAGGAAATTGATGAACACAAAAAAGAGTGGTCTCTTGGTAGAGTTGTAGACAAGGAGTACTGCCAGGCCAAGAAGccagaacatggcatgacaaaatatgatagaatacataaagactttgaggaatctgaggctatgacatcacaactagtctga

Transcript

Chiridota_g11242

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04108	ATG17_like	Autophagy protein ATG17-like domain	Domain	Interproscan
PF10377	ATG11	Autophagy-related protein 11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019460	Domain	Autophagy-related protein 11, C-terminal	Interproscan
IPR040040	Family	Autophagy-related protein 11	Interproscan
IPR045326	Domain	Autophagy protein ATG17-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13222	RB1-INDUCIBLE COILED-COIL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000045	Biological Process	autophagosome assembly	Interproscan
GO:0000422	Biological Process	autophagy of mitochondrion	Interproscan
GO:0001934	Biological Process	positive regulation of protein phosphorylation	Interproscan
GO:0019901	Molecular Function	protein kinase binding	Interproscan
GO:0030242	Biological Process	autophagy of peroxisome	Interproscan
GO:0034045	Cellular Component	phagophore assembly site membrane	Interproscan
GO:0034727	Biological Process	piecemeal microautophagy of the nucleus	Interproscan
GO:0060090	Molecular Function	molecular adaptor activity	Interproscan
GO:0061709	Biological Process	reticulophagy	Interproscan
GO:0061723	Biological Process	glycophagy	Interproscan
GO:1990316	Cellular Component	Atg1/ULK1 kinase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-