Gene detail

Detailed information of Chiridota_g10396 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g10396	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	chr_5	33823084	33942840	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g10396

ATGGCACTGGATGTCTGTGCCATTACCGTCGCACATATGGTACATTTTTCTGCTTTCTCAGCGCAATATTTGCTTTTCTGCGCTGCGCTTCTGCATGCACTATGGAATCCAGATATGATCTGTGATAAGgcgagacaaaaaGGAGAAGATATTCAAGTTGTAAGCATCAAATTTAAGTTATCTCCATCCAAAGAGAGCTTCAAAGAACAGgcatgtgagacttcagctacaAACATGGAGAAGCGAAAACATTCAAGTAATGAAGATACCCCTAAGGCCAAGAAGGTGAAAGTCTCCAGCTCCCAGTCAAGTCAGTCGCCAAGGAAAAATTCCAACAGCATCACAGGGGGTGATGCAGATCATGGTGTAATTGAGAGAATCTTCTTGAAGAATTTCATGTGTCATGGGAAACTGGACTTTCAGTTTGGTCCAAATGTAAACTTTGTGGTTGGCCAGAATGGAAGCGGTAAAAGTGCTGTCATGACAGCTCTTGTGGTTGGACTTGGTGGTAAAGCTGCTGTCACAAATCGTGGAACATCTGTGAAGAGCTTCATCAAAGATGGACAAAATACTGCAGAGATATGCATCACCTTAAGAAACCGTGGCATTGATGCCTATAAGCCGGAGATCTACGGAGAGTCCATTAAGGTTGAGCGAAAGATTAGTAAAGATGGAAGCACAACATATAAGCTGAGGTCCCATAAAGGGAAGGTTGTATCTAACAAGAAGGAGGAGCTTCAGATGATTCTGGATCAATTCAACATTCAGGTGGACAATCCAGTATCTATTCTTAATCAGGACACAAGTAGGAACTTTCTGTTTAGTAAGGACCCTAGGAGTAAATACAAGTTTTTCATGAAAGCAACTCAGCTAGAGCAGATTGAATGTGAATATTCCCGCATCAAGGAACTCGAGTCTATTATCAAGGACAACATTGCTTCTAAGGAGGAAGGGCTGCCTGAACTTGAACAGGAAGCCTTAAAGAAGGAACAAAAGTTTAAAGACATAGAATCTTTAAACACATTATGTAGTAAGCGAGAGGGTCTGTACCACCTGCTTGCTTGGGCTCAAGTTGCAGAACAGGAGAGGGAGTTGCAAAGCATTAAGAATGAAGTACAGAAAGAAGAGAACAGACTGCCAAAGTTTGACAACAAAGTGACAGATTCACAGATTAAAGTACAAGCTGCAGAAGAGAAACACAAGGAGGTTCAGTCAAACGTTGGTGAAATTACCACCAAGCTACAGGAACTAGAACCTCAAATCTTGGCAAAAAGGCAGGCTCTAGATGGGGCCAAGTCAAGAATGAAAGATTTACAGAAATTGGCACGAAACATGGCTAGAACTCTAGACAGTTTGAAAAAGGACAGAACAGGGTTAGAGCAGAGGATAGAAGAGCTCAGAAAAAGTGCTCAACAGGATTACGACCAGGAACGATTACAGAGAGAAGCCCAAATTGAGAAGCTACAACAACTGAAGGTTGCTTCTGATGCTCGTCTCGCAACAACCCTGCAAGACTATGAACGCTTCGCTGAGGCTACAGACAGTTCACGCAAAACCATATACGAACTAAGAGCAAAAGTGAACGATGTCAAACACAACATTGACCAAGTTACTCGTCATGTGCGTCAGTTGGAGTCTAGTAAGAGCAACAGTCTCAGACTGTATGGTGAACACATTCCTGCACTGCTAAGTGAGATTGAGAAAAATGCCAAGAGATTTGACAGGAAGCCAAAAGGACCTCTAGGTCAGTACCTCAGCCTACGAGATGCTCACAATAAATGGGCCCTGTCAGTGGAGGTGGTGTTAAAGGGCTTGATTTTCTCGTTCTGTTGTCACAGCATCCATGATTCTAAGCTCTTGCGACAACTCATGAAGAAGACTATAAGAGGCAATGCAAGAACACCGGGGATTATTATTTCCCCTTTTGAGGATCAGAAATATGACATCAACAAGGGCAGGATTCATGGCAGCATTTATCCATCTTTTCTGGACATTGTTGAAGTTCAAGATCCTGTGATATTTAACTGTCTTGTCGATCAGAGAGGCGTTGAATCTATTCTTCTAGTCGAAAAAAATGAGGATGCTCGTCGGTATGTTCTCCAACCTCCCAAGAATTGCAGGGAAGCTTTCACACTCTCAGGTGATCAGGTTTATGCAGGTCAAGAGCAGCGGTACTACTCAGCTCTTCAGAAGCATGTGCGTGTGATGAAAGCTGATGTGGAAGATCAGATAAGGCAATCCAAGGAGGAACTGGCCACCTTACTCAAACAGCAGGAAGAAGGAAACATATCTCTGCGAGAAATGAATTCTAACCTGTCCTCCAATGAGAGACACAAACAGAAATTCGAACAGCAGAGGAGGAAATTACAGAATGAAATTGGTCATTTGCAAGCAGAGATTAATGAGCTGGAGGCTATTGAGGATCCCGCCCCCATGGATGTCTCAACTCTGGAGGATGAGGTGAACCAGTTGAATGAATCCATAGAGAGACATAAAGAGTGGTACGAGCAGAAGAACACAGAGCTCAAGGCTGCTGTAACTGATTCTGAGGAGAAAAAGGTGTCTTATGCAGCAATCAATGAAAAACTCCAGCAACAGACGGATAATGCTGAGCCCCTAAGGTATGAAATGAACAAGGTGGAATCAGAGATTGAGAGGGCTAAACATGAGCGGAGGCACTACGAGACCAAGAGGAACGAACAGCGGAAGAAAGTGGATGGTCTCAGGAAGGAATATGATAAAAAATCAAAGAGAGTTGATACCGATACTGAGAAAGTCCAAGAGATATTTCCTGAGAGGAAGGACTCGAGGAGGAGTGCAAAGAATATAGAAAATGAGATCCAGCAGATTGGCATACGGATTGAAAAGGAGCAAGAAGTACGAGGAGATCCAGATGAAGTACTTAATGAATACCAGGCAGCAAAGAAGAAGTATGAGGATGCACACAAAGCCATCAGGAAGTTCAAGAACACCATCAGGAAATTGCAGGAAATGTTGGAGTTTCGACAACGTGCCTTTGTGCAACTAAGGCACTTCATAGCACTGCGTACCAAGTATTACTTCACCCTGATGCTGTCTCAACGAAAGTATAGTGGAAAGATAAAGTTTGTGCACAAAGACGAGACCTTGTTGTTGGAAAAGCTTCAAGAGATGATGCTCGTAAGATTCAAAGGCTTCCTCGAGATTCGGCGTTGTATCTCAACAATATGCCGCATGAGGTTCTTGAGAGTCATGTCCCAAAGGAAAATGGAAAGCAAGATGATTATCAACCATAAGGAGCAAAAGATTACATTTAACGTGCATCCCACTGCTGGGGCAGATAGCAACAGTAAGAGCACAGATATGAAAGCTCTCTCTGGGGGTGAAAGGTCATTTTCTACTGTGTGTTTTATTATGGCGTTATGGGAATCCATGGAGGCCCCTTTTAGGGCACTGGATGAGTTTGATGTATTCATGGACATGGTGAACAGACGTATCATTATGGATTTACTGATGCAGGTTGCAAAGGATCATCGAAGTAGACAGTTCATTTTCATGACCCCTCAAGATATGAGCCGCATTCGTGCTAGTTCCTTGGTTCGAATTGTGCGGATGCAAGGACCACGTGAACGAAACCAAACAACTCTTGAATTTCCAGTCCAGGATCGCAACGAAGAAGATGAAGATAATACTTAA

Transcript

Chiridota_g10396

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02463	SMC_N	RecF/RecN/SMC N terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003395	Domain	RecF/RecN/SMC, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036277	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19306	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0030915	Cellular Component	Smc5-Smc6 complex	Interproscan
GO:0035861	Cellular Component	site of double-strand break	Interproscan
GO:0051276	Biological Process	chromosome organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-