Gene detail

Detailed information of Chiridota_g10309 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g10309	COLLAGEN ALPHA	chr_5	31095301	31149551	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g10309

ATGAACGGCACATTGCTGAATGCGGTGATACTCCTTTCGTCTTTAGTTGCACTTAGTACGGGTCAAACACTGGTCTCAGATGATGCAGACTCCTGCATCTACGAGGATAGAGTTATACAAAATGGCGAAAAGGTGATATCTTCCACTGACCCGTGTGTTCAATGCATCTGTAAGAGAGGAGGGCTGCGATGTAAGATAAGGAAATGTCCTCCCCTTGACTGTCCAAACCCATCAATAAGACTAAGAAAATGTTGTCCAATATGCAGAAATGTAGGCGACAATAATAAGTTACCGATACCACCAAATGATGGACCAACGGCATTGCTGGCGGCCACAACAATTTCATCTCCTCTTGATACAACTCGGACCGTTATCGTCCGTCTACCACCGCCACCAATGATACCGCCGCCCCCTCCATCGGTGAATAATGACAACGAAACTCGAGAGGAGACTTCAGTCGACCAACCAGAGATGCCCACATTGCCGCCTATACCACCTCCGTCTCCACCAATACGGCCAAACGGTGGCGCCACAGAGGAACCACCTAATAAAAACAATTATACATGCAAGAAGAGGTGTAGGGGACCTGCAGGTCATCGGGGTCAACGTGGTAAGAAAGGTAAAAGAGGACGGAAAGGAACAAAGGGCAAAGACGGTGAAAAGGGCGAAAAGGGTGAGATTGGTCTAGTGGGACCTCATGGGCCTAGTGGTTCACAGGGGCCTGTTGGGCCACGTGGACCGAACGGAGTAATAGGACCAAAAGGGCAAAAAGGTGGAAGAGGAATACGCGGGAAAAGGGGCGAACGTGGACCACGTGGGTCAGAGGGTTCACCAGGGTGGACAGGACCTCAGGGTCCTCCTGGACCGATTGGACCGAAGGGAGAACCAGCTTTATACAATAATAAGTTACCGATACCACCAAATGATGGACCAACGGCATTGCTGGCGGCCACAACAATTTCATCTCCTCTTGATACAACTCGGACCGTTATCGTCCGTCTACCACCGCCACCAATGATACCGCCGCCCCCTCCATCGGTGAATAATGACAACGAAACTCGAGAGGAGACTTCAGTCGACCAACCAGAGATGCCCACATTGCCGCCTATACCACCCCCGTCTCCACCAATACGGCCAAACGGTGGCGCCACTGAGGAACCACCTAATAAAAACAATTATACATGCAAGAAGAGGTGTAGGGGCAAAGACGGTGAAAAGGGCGAAAAGGGTGAAATTGGTCTAGTGGGACCTCATGGGCCTAGTGGTTCACAGGGGCCTGTTGGGCCACGTGGACCGAACGGAGTAATAGGACCAAAAGGGCAAAAAGGTGGAAGAGGAATACGGGGGAAAAGGGGCGAACGTGGACCACGTGGGTCAGAGGGTTCACCAGGGTGGACAGGACCTCAGGGTCCTCCTGGACCGATTGGACCAAAGGGAGAACCAGCTTTATCCGTAAAAGGAATTAAAGGCGAGCCTGGACGCATTGGTCTACCCGGTCGTAGCGGAGGGCAAGGGGAACAAGGACCAAGGGGCGAACAGGGTCAAAAAGGAGAACCCGGCACAATCGTTGGACCAGGGCAAATCATAATTGTTCATGACGAACGATCCATGAATGAAATTCAAACTGAGGCGGCGCTGGCGTATAGAATGGACGAGAAGAAACTGTACTATAGAGACGACTCTACCTGGAATTGTTTAATAGCAGCCGATGACGTTGATGCCTTGGGAAGCTCTAAAGGATTACCTGGTCCTCCTGGTTTGCCCGGCATGCCTGGACCACGAGGACCCAAAGGCGACCCTGGGAGTATGACTATTAGGACAGGTAACGAGGATTCAGTTTGTGGCAATGGCTTGGTTGAACCTTCAGAGGAATGTGACGATGGCAATAATGATCCACACGACCACTGCGTTGATTGTCGCCGAGCTCGTTGTGGAGATGGATATCAACTAATTGGAATCGAAGAATGTGACGGATTTGACTTCGGAGATTCATCATGTGATACAGAATTTCCTTTGCTCTCAAAAAGTGAAGAAAGAAAAAGTCATCACTTATCAGCACCATTTGGTTGTGCTATTGCTACCTCATATTTGAAACAATGGGTTCGTTACAATGCACTCACCGATGCAAGACAAATACCGCCAAATGTAAAGTAA

Transcript

Chiridota_g10309

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00093	VWC	von Willebrand factor type C domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001007	Domain	VWFC domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR011936	Repeat	Myxococcus cysteine-rich repeat	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006910	Biological Process	phagocytosis, recognition	Interproscan
GO:0030169	Molecular Function	low-density lipoprotein particle binding	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0038187	Molecular Function	pattern recognition receptor activity	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-