Gene detail

Detailed information of Chiridota_g10280 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g10280	SYNAPTONEMAL COMPLEX PROTEIN-RELATED	chr_5	29788977	29894915	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g10280

ATGGGAAAACCATACTTTGAAAACGTTAAAAGCTGCTTGAAAGAATGTGAGTCATCAATGGTACCTCCAAGATGCACTGCAGCCTTTATGCAACAGATGATATCTGTAGTTCAACAGGAACTCTCTTGTCTTCAATTCTCAGATGTGATTGTTGTCATTTCATGCATCCAACACATTGCAAAATTTGAAGATAATGTGCAAGGACTCCCATTTCTGATGAGGAATGGATTGGTAGAAATGATAGAATTTGTGTTTGAAGAAGTTGTAAAGCACATCAGCCCAGCAAGACAAAATTACCAAGCAGCTTCATTAGCAAATAAACTCCTTGATACTCTCCTGGAAACTCTCAATGACATTGCCAATTACTTTAAAGATTACAAACATGCAGTGGCAGAGAAGTTTGTTGAGCCGTTAATGATCTTAGTAGTTAACACAACCAAAAATTTTTGTTCCAGAATGGAGGCTCTGCGATCTCTAAATCTTTTATTGGAGGGCTGTGACACTGACTTTCTCCATTCCGTACAGAAGCACAACATCATGGAGCAAATGCTGTCTCACTTTGCAAGTCTGCTGCAGTCTGCGGGAGATTTTGAAATGCAGGTAGCATGCACTGAGACATTGGCAAGACTTATAAAGAAGTCAGAAAGGAGTCACTACAGCAGGATTTTCTTTAGTGATGAAAATGTGGCCTCAGAGTTTCTAAGAATAAGAGATGCAAATTTTGAATCAGATTGCAGATGTTTTCTGAACCTTCTGAATAACAGGGATGCTGCAAAGCAAAGTGTATTTTCATTACCTTGTGTGGCTGCCTATTTGGGACACCAAAAGCTCCATCCTCCAAAAGATGAAGATCTGACTGAGTTTTGGGTGGACTTTAATTCTGTTAGTCATTCAGTCACGCTGTATGTGCAGGGGGAAGGTGAAGAGAATGAGACTGCGGGAATGTGGGAAACAGTCATATTTTCTCAAGATGTGCTGGAGAATTATTTGATTCAAAATTGTGGGGGAACCAAGCAGCTCCATATGAAACTGAAGGTGCCCGTATCTGACCTTCTTCCGGGCTGTGGAGACTTTTCTGACTCAGCTCATATCATCTTTTTATCCTCACTGAACCTGGCATCCCCTTCAGCAAGATCACTTGGCAGCAAGCTGAACTCCACTACTAATCAGGTACATGTATCAAGGAAATCATCCCAAAGCAAATTCAACATTAGTGTGAGCAAATTTTGCGAGGAGATGGCAGACGTGCCTGTCATACAAACAAGAAACTTTCCTACAACTGAAGCTCTGGCACCAGCGATGAATCACCAACCAAACGTTCATACTCAATGTGCTGGTCAGGAGATGACCCCATCAAGATCGAAGATATCTGTTCCATTAGAGCTCATGAAAACACCAGCGGGTCATATGAAGACACCAGCTCAGCAGAAAACACCTAACTTGAAGAACCAGCAAGTTTTCCATCAGAAGACACCATCTAATCAACATCCTCCTAAAAGGGTCAAGACTCCATTAAACATAAAAATTCCTGGAAAAACACAAACGGCAAAGATTCATGAAAATGATTACAGAAACACATGCACAAAGACACCTCAGAAGGTCTCTGTCTCTGCCCATGTCAGTGGAGCATCTGATCAGGAAGATTGTCAAGACAGTGATATAACGAAACAAATTGCGCCGaacaaacagacacacaaacaaacagaggaacaaaagataaagagcaacaaaaaaTCCTCGAAGAAGAAGGGTGAAGATCTGAGAGAGAATGCAAGCAGGGTGCAGCCTGATGGATGTTCATTAAATGACTTCAAGAAAAAGGATCAGTTTAAGCCTCCATCTTCAAACAAAGAAGTTGAAGATGAATCAGAGAAGATATCGTCTGATCTCGTGGATGCCCCTGTGAGTGATGACATCATCCAGGAGACACAATTTTGTGACTCTCAGAATTCTGAAATTTCTCTTCAAGAATTTCAAAATGCTCAAGAAGTGGAGGAAGAAATGTCTGAAACGTTTCAGCTTGGTAGCACAGGAGCTGTAAGCCAGAAAGGTCAATTGAAGAATAAGAAACTTAGCACTCAAGGAAAGAGGAGAAGTCCTCGTCTCGCTGCACTTCAGTACCTCAATGATCTTGTTCCCAAGGTTTCCAAGAAGAAGGAGTCTGGCAGATTCAAGTTGTACTCTGAGTCTAATGAGACATTGCACAATGAGGTTATagatgtgagagaaggaagaagatgcaaggtgacagatgaaaCAGATGATCTTGTTTCCAGTTCATATCCGTCACAGGATAGTATTGCTGACTTTGTTACAGAGTCATTTCCTTCCCAGAGAGTCTCCCAAAGTAGGTATTCAAAATCAATGAGTCCACTTTTAAGTGACATTCCCGAAGCATCTACAGAAGCATCATCTACATGGGATTCCCAACCAGAAAAGTCCAAAGGGTATTCAAAGAGACATGTTGGAAAAACAAAAAAGGCTGCTGGAAAACAAAAGCAAACATCTCGAACCAAAGCAGAGAAAACATCTGCCAACAAGACCAAGAAACCAGGTCACTGTGGAAGGAAAAGGCCTGAGAGAAAGACAAAGAAACCAATTGAGGTCCCTGCCAATAAGATGACCAACAGAAGTAGTGACCATTTAAGCCTTTCTTTGCCTGTAAACCTGATGCAGCAAGATGAGGATGCTGATGGAGATCCATATGAATTCACAGATTACTCAGAAAGAGAAACCACTCAGGGGAAGAGAGGTAAGAGAAGAAGCAAAAGCGAAAGGAATCAAAGTAAAAGTGTAGAGAAAGTTAAGGGTAGCAATAAAAAACAACTTTGCTCCAATGTAACAAAGAGACTGGAAGAATTGGGTAAAACCAGTGGAAGCAAAGACACCTTTGATCTCAGTAAAAGCATTGAATACTGGAAAGGTGATTTTTTTGGAGATAAAAAGAAGGTGAAGATGACCAAACAGGAGGAATTTTTGAAAAAGAAGTCGTTTTTAGCATTTCCAGCAAAAGCTTTGACATCAGTTAATAAAGTTGCTGTGGACAATGGGAGAGGTAACCTAAGCAAAAATGTTTTTGGAGGGGACTCTAATGAAAAGATGGAGAGAAAACAGAGAGTGAATATGACTGCCAGAAAAGATGTTAATGGTGAAACATCATTTGAGATTGATGACAATGATGGTGACTTTCCTGGCAGTGATACAGAAGGAGAGTCAAAACTCAAGAAAGCACATAGAGGAAAAGATGTCAGCTCTGATAATGATAAAACTTCTCTCCTTGAAATTATGAGAATCAAGTCATTTGAGAGGCAGCAGAGAGCTAAAAAAGATGAAGTTATTGGTCCAGATGGGGATGCCTTACTCAACAACCATTTGCAAGATATCAAAAATGTTACAGCCGAAAGCTTACAAACATCAAAGAATCATCAGTCAAAGGTCACAAGTGAGAGGAAATCGAGAAGAGGCCAAGGTGCAAAGGATAAGAACAGTACAAAAATATCGGCTGTTACTGCTTCTGCAGAATGTGATGATGAACTTCCTGATATCGAGGTTGTAAGAGATTTTCAGAGGAAATTTGATGATCTCGGTGATTTCAAAGATGATGAAGTAGAAGGATTTGTTGCCTCTGTCCTCAAAAGCTTGCCACAACGGAAAACCCCCATAGTAAGCAAGAAGTCTGTGAGAGATCTTAAGGCTAAGAAATGTAAGATAATTGATGGCACTGACATACAGTCAGATACAGATAAATCTTCAGCATTAGAGCTGGAAAAGTTCATGTCGCCAAGACCTTTGTCAACTTACAAGAGGCAGCATAGTGAGATGGATCTGACAATGGAGGAAACTGTTTCTGAGAATGAACAAGGGTTAGGTACAGATGTAGATTTTGATGTTATCAATAAGGAATTAAAGGAACTTAGTATTAGACTGCAAAACATTGGGAAGGAGAAGCAGGAGAGAAGGAGGAGATCTTCTGGAAGCAAAGAGCAAAGTAAGAAGAATGGAGTTAAAACCATGCCTCAGAAGGAGCATTTTGGGCCGGAGATAGAGGATGAGGACACAGATGAACTTCTTGGAACTGAGGGGTTTAATGTGGATGAGACTGAGACCGTTGTGACAGTGGAATCCTTTGCATCAGTGTGCCAGGACATTCTGCAAAAATCTGGAGAAGGTATTGCTAAAACAAGATCGAGAAGAAATATTCCTGCAGTCAGTTACAAAGATATAGATAAATCCTATTCAGATTCTGACCACTATAGCATCGATGAAGAGAATGAATATATCTTGTCTTCGGTGTTCTCAGAGAATAGCAGAAAGTCAGATTTTTCTGATAATCAAAGCGAATTAAGCTGGCTAGCACAGAAGAAGAAACAGAGGGTCACCACTTATTCCAAAAGCCACTGTCGTGAATGGACAGATGTTAATCCGCAAATGGAGAAGAATGTGTTTAACACCACGAAGAAGAAACCAAAGAAGAATCAATCGAAAGATATAAAAAGAAAGGAGCCCACAGCACCAGTGAAAAAAAAGAGGACTTCTGTAGATGTGATCGATAAGGAAGATGAAGAAAGGCAGCTCCTGTATTTCAATCTCAATTCCTTGGAAAAGCACTCTGATGAGCAGGAGTTCATCCTGCATCAGATGATTGTAAGTCAAGAAAGTGAAAAAGTGACCTCCACACCTGGATTTGCAGATGACAGTGCAGATGAAGATGATATCGAAATGCCCAGAAATTTGCCATTCATAGAGCCCCTTACCCCAGCTTTCACCATCGAATCCATCCCATCACAAACAAGTTTGAGGACACATTCAAGCGGAACCAAAACACCCAAGCTTCAGGTTTCCTTTGATGATGAGCCCCCACTGGAAGTTCCTGATGTAGAATCTCATGATGAAGACTTTTTAAAATCAGCAGGTCCATCTAAGTTGTCCCGACCTCACCATTCATCACTAAAGAGGAAGTATGAGAGTATCTTGGCTGACCTAGAGGGTGAAGATGAGGAGGATGACGACTCCTTTCAAACAAAGAAGCAGATGCTACCAAGAAAGTTGTTTGAGGAGTATATTGCAGACAAAGAATCCAATGAGTCAAGCATGGAGGCAAGTCAGAGTGTTGATGATGACCATACCTCCACCAGTACCCCAGCTTCTTGGGAGTATCAACCTGCAGCTTTCCCAATGACTGATCTCTTCACCATTTTGGGACAAAATCTCAAGAAAAAAATGATGATGAAGGAAGCCAACACCCAGACCATGACAGAAACTGCTATAAAGTCAGCCCAGCAACACATGTCAAACTTATGGACTAAACAGTCAAAAGCAAGCCACAAAGCCACACAGGAGTTTCGGGACAAGTTCCTTTCTGAGGTTGTGGGATTGGAGACAGATCTAGAGAATATGAAAGTATATGAGGATAGATCACATTTAATCAACCATCAGAAAGTGAAGAATGTTAACAACATGGTTAGCCAtagtcacaaagatatttgccagtgtgcggaattgatattcaaagctcaaacccatcctaacctcttcatcaatctccacaaccaagtcaaagaccaactctcaaattacacctccatctatactgatgggtccaaggagggcaacaagacagctgctgctgcggtcatccaagacatcaccctcagtagcagacttcccgactactcatccatcttttcagcagaggctaaggccattctccttgccctcaactctattgagtactccctgctcagccactttgttattttctccgactcaaaggctgttcttacttctttactcaactttaaatgggataacctcacatgccacctcctcctccgcaaactcctttctcccaccctctgcaggaaaagtatttttttcttccggatacccagccatgttggcatcccgggtaataacagggctgatgcagccgctaagcttgccctcaccctcctccctgcctcttttcccaaaaccctctctgacatcaaaccgcttatcgcttctcttgttcgggaccgctggcaaaactcatggaagtcccaaattgataacaaactccatgtcatccagcccacaattccgatcaaagccaccatcaacaacctctctcgtattgataacgttcatattacccgtcttagaattggtcacactcatctcacccactcccacctcataattggctccccccaacccctctgcaacaattgccattgcacactcacaatccatcacgttctccttgcttgccccctgtacaaccttcccagagcttcccttgcttcctacaactga

Transcript

Chiridota_g10280

Protein

Chiridota_g10280

MGKPYFENVKSCLKECESSMVPPRCTAAFMQQMISVVQQELSCLQFSDVIVVISCIQHIAKFEDNVQGLPFLMRNGLVEMIEFVFEEVVKHISPARQNYQAASLANKLLDTLLETLNDIANYFKDYKHAVAEKFVEPLMILVVNTTKNFCSRMEALRSLNLLLEGCDTDFLHSVQKHNIMEQMLSHFASLLQSAGDFEMQVACTETLARLIKKSERSHYSRIFFSDENVASEFLRIRDANFESDCRCFLNLLNNRDAAKQSVFSLPCVAAYLGHQKLHPPKDEDLTEFWVDFNSVSHSVTLYVQGEGEENETAGMWETVIFSQDVLENYLIQNCGGTKQLHMKLKVPVSDLLPGCGDFSDSAHIIFLSSLNLASPSARSLGSKLNSTTNQVHVSRKSSQSKFNISVSKFCEEMADVPVIQTRNFPTTEALAPAMNHQPNVHTQCAGQEMTPSRSKISVPLELMKTPAGHMKTPAQQKTPNLKNQQVFHQKTPSNQHPPKRVKTPLNIKIPGKTQTAKIHENDYRNTCTKTPQKVSVSAHVSGASDQEDCQDSDITKQIAPNKQTHKQTEEQKIKSNKKSSKKKGEDLRENASRVQPDGCSLNDFKKKDQFKPPSSNKEVEDESEKISSDLVDAPVSDDIIQETQFCDSQNSEISLQEFQNAQEVEEEMSETFQLGSTGAVSQKGQLKNKKLSTQGKRRSPRLAALQYLNDLVPKVSKKKESGRFKLYSESNETLHNEVIDVREGRRCKVTDETDDLVSSSYPSQDSIADFVTESFPSQRVSQSRYSKSMSPLLSDIPEASTEASSTWDSQPEKSKGYSKRHVGKTKKAAGKQKQTSRTKAEKTSANKTKKPGHCGRKRPERKTKKPIEVPANKMTNRSSDHLSLSLPVNLMQQDEDADGDPYEFTDYSERETTQGKRGKRRSKSERNQSKSVEKVKGSNKKQLCSNVTKRLEELGKTSGSKDTFDLSKSIEYWKGDFFGDKKKVKMTKQEEFLKKKSFLAFPAKALTSVNKVAVDNGRGNLSKNVFGGDSNEKMERKQRVNMTARKDVNGETSFEIDDNDGDFPGSDTEGESKLKKAHRGKDVSSDNDKTSLLEIMRIKSFERQQRAKKDEVIGPDGDALLNNHLQDIKNVTAESLQTSKNHQSKVTSERKSRRGQGAKDKNSTKISAVTASAECDDELPDIEVVRDFQRKFDDLGDFKDDEVEGFVASVLKSLPQRKTPIVSKKSVRDLKAKKCKIIDGTDIQSDTDKSSALELEKFMSPRPLSTYKRQHSEMDLTMEETVSENEQGLGTDVDFDVINKELKELSIRLQNIGKEKQERRRRSSGSKEQSKKNGVKTMPQKEHFGPEIEDEDTDELLGTEGFNVDETETVVTVESFASVCQDILQKSGEGIAKTRSRRNIPAVSYKDIDKSYSDSDHYSIDEENEYILSSVFSENSRKSDFSDNQSELSWLAQKKKQRVTTYSKSHCREWTDVNPQMEKNVFNTTKKKPKKNQSKDIKRKEPTAPVKKKRTSVDVIDKEDEERQLLYFNLNSLEKHSDEQEFILHQMIVSQESEKVTSTPGFADDSADEDDIEMPRNLPFIEPLTPAFTIESIPSQTSLRTHSSGTKTPKLQVSFDDEPPLEVPDVESHDEDFLKSAGPSKLSRPHHSSLKRKYESILADLEGEDEEDDDSFQTKKQMLPRKLFEEYIADKESNESSMEASQSVDDDHTSTSTPASWEYQPAAFPMTDLFTILGQNLKKKMMMKEANTQTMTETAIKSAQQHMSNLWTKQSKASHKATQEFRDKFLSEVVGLETDLENMKVYEDRSHLINHQKVKNVNNMVSHSHKDICQCAELIFKAQTHPNLFINLHNQVKDQLSNYTSIYTDGSKEGNKTAAAAVIQDITLSSRLPDYSSIFSAEAKAILLALNSIEYSLLSHFVIFSDSKAVLTSLLNFKWDNLTCHLLLRKLLSPTLCRKSIFFFRIPSHVGIPGNNRADAAAKLALTLLPASFPKTLSDIKPLIASLVRDRWQNSWKSQIDNKLHVIQPTIPIKATINNLSRIDNVHITRLRIGHTHLTHSHLIIGSPQPLCNNCHCTLTIHHVLLACPLYNLPRASLASYN*

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18581	SYCP2_ARLD	Synaptonemal complex 2 armadillo-repeat-like domain	Repeat	Interproscan
PF18584	SYCP2_SLD	Synaptonemal complex 2 Spt16M-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002156	Domain	Ribonuclease H domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024835	Family	Synaptonemal complex protein 2-like	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR040560	Domain	Synaptonemal complex protein 2, Spt16M-like domain	Interproscan
IPR041322	Domain	Synaptonemal complex protein 2, armadillo-repeat-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15607	SYNAPTONEMAL COMPLEX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004523	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-