Gene detail

Detailed information of Chiridota_g10027 in Chiridota heheva Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Chiridota_g10027	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	chr_5	21270974	21314179	-

Gene Structure

More details in Jbrowse Sequence

CDS

Chiridota_g10027

ATGGCCTCCACTAGAATTCTCGGTAAATTTAGAGCGGCGTCTCTCCGCAAGTTTCTAAATCAAGGTGGACTTAGTATGAAGAGGTATTTGTCAGTTTCTTCAGCACTAAGAGATAAAAAGTTCATCAACTATGAACTCAAAGGAGACATCGCGGTGGTTAGAATGGATACACCTAATTCCAAGGTGAATGTCCTTTCAGAGGAGTTTAATGCTGAAATGGAAGGAGTCATTCAGGAATTACTGGGAAAAGAGGCAGTAAAAGGAGTGGTTCTTATCTCAAAGAAGCCTGGCTGTTTCATAGCTGGAGCAGATATTAACATGCTGGGAGCATTAAAGACAGCGGAAGATGTCACAGCAGTTTCAAGACAGGGTCAACTTACATTTGAAGCCATTGAAAATAATCCCAAACCAGTTGTTGCTGCAATAAGTGGATCATGTCTCGGTGGAGGCCTGGAGGTTGCCTTGTGCTGTAACTACAGAATAGCAGTAAAAGACAGAAAAACAGTATTAAGCGCCCCAGAGGTTATGCTAGGTCTCTTACCTGGTGCCGGAGGGACACAGAGATTACCAAAACTGATTGGCATTCCTAATGCAATGGATATGATGCTCACAGGAAAAAATATTCCAGCACAGAAAGCCAAGAAGTGGGGATTGGTTGACAGACTTGTAGATCCAATAGGTCCGGGACTTCAAAGTCCACAAGAAGGAACTTTGAACTTTCTGGAAGAAGTTGCAGTAGAAGCAGCAAGGGACTTAGTAAGTGGAAAATTGAAAACAGAGAAGAAAAAGGGATTAACAGAAAAAGTAACAGACGCTGTTATGGGCACTCAGTATGTACAAGACTACATCTTCAAGCAAGCTCGTGGTATGGTTATGAAGCAAAGCAAAGGACTTTATCCTGCCCCTCTTAGAATCATCGATGTGGTCAAAACGGGCATTCAGCAAGGAAGTGAAGCAGGCTACCTGGCCGAGGCAAAGGGTTTCGGTGAACTGGCAATGACTCCACACTGCAAGTCACTCATGGGATTATATCATGGTCAGGTGCACTGTAAGAAGAATGCCTTTGGTATTCCGCAGAGGAGGGCAAAGACGATCGGTATCCTTGGAGCTGGTCTGATGGGGGCAGGTATTGCCCAGGTCAGCGTAGATAAAATGAAGGTTCTCTTGAAGGACATGTCTCTGGCAGGTGTGGCCAAGGGGGAACAGCAGATCTACAAAGGGCTTGACGGCAAAGTGAAGAGAAAGAGATTGACGAGCTTTGAGAGGGACACCATTTTCTCCAACTTGTCAGGTCAGGTGACCTACGATAACTTTGATAAATGTGACATGGTCATCGAAGCAGTTTTTGAAGACATCAACATCAAGCATAGAGTAATTAAAGAACTTGAGCAGGTTATTCCAGACCATTGTATTATTGCTTCCAACACATCAGCCTTGCCCATTCACAAGATTGCAGAAGGCAGTAAGAGACCAGAGAAGGTTGTAGGAATGCACTATTTTTCTCCTGTGGACAAGATGCAACTCTTAGAAATAATCACAACGGACAAAACTTCTAAAGACACCACAGCATCGGCCGTGGATGTGGGTTTGAGGCAAGGTAAAGTGGTCATCACTGTTAAAGATGGCCCAGGCTTCTACACAACCAGGATACTGGGGCCTATGATGGCTGAAGTGTTGCGTATGGTTCAGGAAGGAGTGAGCCCCAAGGAGATCGACAGCCTCTCGACACAGTTTGGCTTCCCCGTAGGATTTGCAACACTAGGCGACGAAGTGGGCTTGGACGTTGCAGCTCATGTGTGGAAGTTCTTTGACGGGGTCTATGGTGAAAGGTTTGGAGGTGGTAATGCCCAGATGTTGGTCGACATGGTGGATGCTGGTTTCCTTGGACGCAAATCTGGTAAGGGATACTATATATATGAAGGCAAAAGCAAGGACAGAAACATTAACGAGGAGGCCCAGGCCATCATCAAGAAATATTCATTGCAAAAGAAGGGTGCTGATAGCACGGAAGATTTACAGATGCGCCCAGTCACGAGGTTTGTGAATGAAGCCGTCATGTGTTTACAAGAAGGAATCCTTGCAAATCCAATTGAAGGAGATATTGGTGCAGTATTTGGCCTTGGCTTTCCACCCTTCCATGGAGGTCCTTTCAGATATGTAGACAGCTATGGAGCAGACAAGCTAGTAGCCAAGATGGAAGAATATGAAAAAATTTACGGAATTGCCTTCAAGCCATGCCAGTTATTGCTAGACCACGCCAAAGACTTGACAAAGAAGTTTCATACCAAATAA

Transcript

Chiridota_g10027

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00378	ECH_1	Enoyl-CoA hydratase/isomerase	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001753	Family	Enoyl-CoA hydratase/isomerase	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR006180	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR012803	Family	Fatty acid oxidation complex, alpha subunit, mitochondrial	Interproscan
IPR029045	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR050136	Family	Fatty acid oxidation complex subunit alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43612	TRIFUNCTIONAL ENZYME SUBUNIT ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003857	Molecular Function	3-hydroxyacyl-CoA dehydrogenase activity	Interproscan
GO:0004300	Molecular Function	enoyl-CoA hydratase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0006635	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016507	Cellular Component	mitochondrial fatty acid beta-oxidation multienzyme complex	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-