Detailed information of CAI8056605.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8056605.1RNA POLYMERASE ECF-TYPE SIGMA FACTOcontig_9349_pilon2096421440+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04542Sigma70_r2Sigma-70 region 2 DomainInterproscan
PF08281Sigma70_r4_2Sigma-70, region 4DomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR007627DomainRNA polymerase sigma-70 region 2Interproscan
IPR013249DomainRNA polymerase sigma factor 70, region 4 type 2Interproscan
IPR013324Homologous_superfamilyRNA polymerase sigma factor, region 3/4-likeInterproscan
IPR013325Homologous_superfamilyRNA polymerase sigma factor, region 2Interproscan
IPR014284DomainRNA polymerase sigma-70 like domainInterproscan
IPR036388Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR039425FamilyRNA polymerase sigma-70 likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR43133RNA POLYMERASE ECF-TYPE SIGMA FACTOInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006352Biological ProcessDNA-templated transcription initiationInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016987Molecular Functionsigma factor activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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