| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8054023.1 | RNA POLYMERASE SIGMA-54 FACTOR | contig_8407_pilon | 56444 | 58282 | + |
| CDS | |||||
| CAI8054023.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8054023.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04552 | Sigma54_DBD | Sigma-54, DNA binding domain | Domain | Interproscan |
| PF04963 | Sigma54_CBD | Sigma-54 factor, core binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000394 | Family | RNA polymerase sigma factor 54 | Interproscan |
| IPR007046 | Domain | RNA polymerase sigma factor 54, core-binding domain | Interproscan |
| IPR007634 | Domain | RNA polymerase sigma factor 54, DNA-binding | Interproscan |
| IPR038709 | Homologous_superfamily | RNA polymerase sigma-54 factor, core-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR32248 | RNA POLYMERASE SIGMA-54 FACTOR | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001216 | Molecular Function | DNA-binding transcription activator activity | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0006352 | Biological Process | DNA-templated transcription initiation | Interproscan |
| GO:0016987 | Molecular Function | sigma factor activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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