| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8051504.1 | RNA AND EXPORT FACTOR BINDING PROTEIN | contig_7751_pilon | 42695 | 53331 | + |
| CDS | |||||
| CAI8051504.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8051504.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif | Domain | Interproscan |
| PF00542 | Ribosomal_L12 | Ribosomal protein L7/L12 C-terminal domain | Domain | Interproscan |
| PF13865 | FoP_duplication | C-terminal duplication domain of Friend of PRMT1 | Family | Interproscan |
| PF16320 | Ribosomal_L12_N | Ribosomal protein L7/L12 dimerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000206 | Family | Large ribosomal subunit protein bL12 | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR008932 | Domain | Large ribosomal subunit protein bL12, oligomerization | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR013823 | Domain | Large ribosomal subunit protein bL12, C-terminal | Interproscan |
| IPR014719 | Homologous_superfamily | Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like | Interproscan |
| IPR025715 | Domain | Chromatin target of PRMT1 protein, C-terminal | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR036235 | Homologous_superfamily | Large ribosomal subunit protein bL12, oligomerization domain superfamily | Interproscan |
| IPR051229 | Family | ALYREF mRNA export adapter | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR19965 | RNA AND EXPORT FACTOR BINDING PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003729 | Molecular Function | mRNA binding | Interproscan |
| GO:0003735 | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005840 | Cellular Component | ribosome | Interproscan |
| GO:0006406 | Biological Process | mRNA export from nucleus | Interproscan |
| GO:0006412 | Biological Process | translation | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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