Gene detail

Detailed information of CAI8050130.1 in Geodia barretti Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
CAI8050130.1	CADHERIN-23	contig_7382_pilon	147175	169266	-

Gene Structure

More details in Jbrowse Sequence

CDS

CAI8050130.1

MVEGRFGTGSATTSLTFSSQPVTITSLLDFSLLDNSSSDTLSGEIGFEATLSLRATFNDSTTFPNFIPEAEGVFPSLVSLTSDNPMVASVSSTSGEVTLIGNHHSQVALTATHISSGASVQLYFFCNLHPAVGDIDIGDSRGPPVPSVKLEDSFSLPVRVNSGSQLLQSFQLIMLYNSQQLSIVGFSNGEDWVTGTLAVNDMPGQGLVHIEGSTSNSDAVSGLVHIADLVFRAERVATVSLDGLVISLMDTGGEMIPTNGVANRGFVAAKVSFIVSEGSGRRRRAAEENPRTLRARRNVTPCPTTPPCEVCEGTRERGDINGDCVLDSTDPTYLLAYHAEGLFDFQLPSGLSLQLSLIPAQSEALDVDINTVDDVADAYYLSQVETGLLNFLTDLSIVPVQNNSDCFFRINATLVSKDDTPATNETSAVFFDVSLPFDSLFENQRLFDESTFTLGAASTVSKGISLQGGILEAEYLSPGIFGVQFHSNITSNDIGVSVIQVTTSDGSTTSLGRTRAFLGLPDPPHSFPHKLTLNLPTFSDTTTVSYANGYNPLTTFDNTLSSGVCLIPPGPPIVSPTEYSEEIAEDSPEGTFVVAINSTSQSDEQLSFSIAEGNTGEVFLVSSFGLVLVNRELDFETTAEYRLLIAVTDPSTGRSTFANVAILIMDVNDNRPQFSPVPPVLLPQNTPPGSVVTTINASDADAGANADISFSIESEGDTFDIDESSGIVTLTQTLDFDTQSYYEVVVTAVDGGQSPLNSSLAINITILPPDPTVLEFTNALNLSISEDARPGHVVVQLEAVPVSNETINATISYSLDAPMGSPFSLSSTTGELVVSGALDREMDDLYEITVSASITNIRRSIPASTFVSIMVLDINDNAPEFSEDSYSATLTENSAPDTLSLNIIATDLDLGRNGSVTYTLLEPLQGLLINSSSGVLSNSLVFDFETTDVIGVTVVATDNGSPPQSSEVNISIYIVDINDNNPIVVASPDTKINISEEAPLGMVIFSLSIFDNDTVDVNGALSLMQLSGFTHFYLNTTTGDVTLTRSLDYETAQNMSILVQGSDSGSPMLSSPVTELVVIVEDENDNSPIFSQLTYSVLISELEAVGEILLNLTISDVDGSEPNRETIFFFSSHSTTSPFNLTSDGQLVLSQPLDRERNDSYLLTVEAMNIVPGTNASLASIYISVIDENEFSPAFEAETYNVSVIEEKAGEFVAQVTATDSDSTANVSYRIHGVEAALFGISNEGVITNIVPLDRESKSSYRVTVVASDNSEPEKTSAAIVMVTVADINDNAPEISSFDKTIRISETTSVGTTLTSFTAEDPDNGENGTVTFFLVNTTEDFVLTLTGDLSVAAALDAIVTPLYNLTVFAEDLGTPALSTNVSLTVIVLPYSAPVFNQSIYTASITENNPENTSLLQVNATSRDPDASITYSLENSVSGVFSIDPNTGSVIVLQVLDREELSSHNFSVIASVVVNGSESTDNAEIVVSVIDANDEEPYFNSTSFSFTVNETAPIGTLLATIQAFDDDLGENAVVLYSLKPVSVLDDGLFEIDQQNGNLTVSTSLIDRTENYLFILTASNLESVGNLSANLSLAVDITHVNDFTPEFNESVYGLNVREDTIPGSRALLAVLAIDGDIGTAGQVEYSLDTNTTLFSINSTTGGIALSSSLDYETLPMLGFEVEVIARDGGFPSQSSTAVINVTVVDVNDNPPVFSQISYNGTIEENAVVGTSILQLMVSDRDSPVNSYVTFDILSTPDVSGLFSVDENGTLRSDDVFDAENAASFTFMIIAANDGLGGSLTAATIITVDVIDLNDNSPMFTEISYSRVLKAPLEPGIVLITVSAMDADRTDQNNEIYFSLNDTFPSGFLDIDRVSGTILLAEEVEEAVNISAIVIATDRGDPPNTMTAEVSVIILSPDDLTAGREFDFSITGSPGLSLTGLPTEASEHFFQQRLNLALGRQGSDSHRFTAELGAVVGSVEVPLTRLPPSSVDAVLMTPDVWSDDKRIEVAVQVRDTFGNVQTDGSVEPMVIVRHPSLPPIPYNTCTPSLENGTCIASISLPEEWFSSDAILTVSEVVVENMPEIVGTVQLYATPVFISPSSTYVYIEMPYRSLTTGEMITVPVYAAAGESSVASYTIQIETSPEVELHGLIVSPNEWLAETVSTTSGGTTVTAVRANQTVIPPSGQARLFDISATIISSGRTGLIDNAVSATVLFLGDTHLSQLLPEPPQPSTPAFALNRMGTDTTGHLYIDSDPPLGLFAYASTAELVNTAGLTGNTVNVPLTTLSVHRHAQIVEVAAEECQTGNENVVLTDCSTLVLTPAQTQGSESAQVAVSYSGFNASFPVRVWVPEFPIKLASLDTELNKVEGWFDSQDCRPKYQRAKIQAFANFTDSIASVRDIVITDLVSGALTSTNNSIATVNQNFITGISPGLAGIRFTVGSETSELEINVTDQPSEVLGLDIQIVTDITVSTILPANDREVGNTLNITVGQNFDSAGDTGSIITTAVFADGSRMVLNGTQDDLSLTSLNTSVLDFLNDETLVVFSSGSGELIQAEWRSDTSFCPEQSAISSGEAELVINLSELGAGRKRRSTTAKEKLPLSYRYEVGANLMLENSNGDQLKTSHPSEMRFDSSEKSRVRRTVGSTVTGDLDGNGGFETSDASYLQRYLLSLTPGALLEEEFNLTTNHTQRFDIDMSGEANPNDVIFLLKVHSNIYRFVTDISFQSVSVMDEGCLLAINVTLRDSNDHPALPESTQLFIDFVHENPRFQAMFDSTNITEPGEKEPVTKGDGEYGGLVQAEHYGEGVFGITTQSAINITGIGLSLIQVTFDSENETSPVRNVGMFQSGRPKFNSSLNLTFSTQGHRVTISRKNGYTPLRLVDSTLTSTECHLRQLPLFFEQSLYAANVPESTVLLVVVLQVSAITHRPGSTVNYSIADPSAPFAVEPESGEISVAGGLDFDFGERFYNFTVLAEEVSNSSVLMTAGATVNVGVLNENDLRPLIESIAPFDLPANTTAGEAIFTANASDPDGLDQLTYSLSSLPNLFSINETSGTVSATQSLLHLGNPRVTLTVTVSDSLLTSNLTINLTIFHPSFSLEFLTGSLLENATIGEAVVVVVIDEARTQTFSFSISGDLFTINSTDGVTATIAVNGSLDYEMFPVHVVTVVADSSHFHLETNVTVFVLDVNDNCPTFPVSQYTVSFSGGSPVGTVIDNHPRARDRDTAENSVITYSISSQLPSGIFSVDPTSGDLRLAQSLERGPSAVSLNLSAFDDCTLGVNGSLSIFIDVNLTIVSFSPDPPVAALTIGEAVGVTLSISTAIVVLLLLVMVAMAMSHMKRRRKDKLPAFLSHDFQVEHIGVEEHPVADDSVDVLLPLAEQKGRHFAEKFGKEDETTAFWYQDERRVELVPPQYRSSDGESSDDEDLSRVGLDTGEWAFDLPPPMSEDSDPDMSDLWVVEDGTLLSEKKGRKHSFLSRKNTGTSGTSGGEKRTSRIMPKFSLRRHGSRGAGAMGGGGEGDRVRLVEGEGGEAWGEDEETTGQRDVMSEAEIQNVKFQLAGLKRKRDSVLVGGKVIPTIQEESETVQPPRPPASTPSVITMETAKECATRLRRTVQSGEYRAQYQKLQAVKPRSGHTHASLACNAGKNRYRNVLAPDHSRVKLVNSHPKVEGGDYVNASHIDFPSAQNGYIVTQGPLPSTLVDFWQLVWEQGVTRVVMTCNVVEDGRVKSERYWPEIGKTATYGSIAVQSLSLRQRKGHRETSLSVTCDGVSREVTHYHFTGWPDFGTPSTTGGFVDLVKSVGGTRGGERGPILVHCSAGLGRSGVFVAVHSSLETQAEGTARIDLETTVREMRKQRGGMVQTPDQYRFCFEAVAEALDPVLPPTEEEEFRPPVGTQSLSKHATFPQPQVSNAPPLPPRPSSQTPLQQQETRSVKIRKSSIPQSQPQLPPSEEDIPNLPPFQDEDILKRVSSPPPPSSSPPPPLTPSTSETPDDTPTKYPFLETSPEATPTKQPTSDEIPDICVTPPTRHESLSSMNQDFESMDRKLKASSFARHQERGKRTDSGFQELPRDLASPPEKSSAVRTTSKVKNKQDTPPQRSKNHGAVKTSSLPQTKPVDGEKKESRMTEDELKETLSGFEVPPPGKRRGIRDWRRPDYGGGVSSEDGSDEEELRGDDTEAKMGRGKLVDEDGGGFQDCTVVVFGETSKVGSVPFPDPQTTTGTCESDSD

Transcript

Protein

CAI8050130.1

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF16070	TMEM132	Transmembrane protein family 132	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR000387	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR002126	Domain	Cadherin-like	Interproscan
IPR003595	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR016130	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR031437	Domain	Transmembrane protein family 132, middle domain	Interproscan
IPR036439	Homologous_superfamily	Dockerin domain superfamily	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000272	Biological Process	polysaccharide catabolic process	Interproscan
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016311	Biological Process	dephosphorylation	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-