Detailed information of CAI8049516.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8049516.1SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54contig_7278_pilon1844121063+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00448SRP54SRP54-type protein, GTPase domainDomainInterproscan
PF00925GTP_cyclohydro2GTP cyclohydrolase IIFamilyInterproscan
PF00926DHBP_synthase3,4-dihydroxy-2-butanone 4-phosphate synthaseFamilyInterproscan
PF02881SRP54_NSRP54-type protein, helical bundle domainDomainInterproscan
PF02978SRP_SPBSignal peptide binding domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000422Family3,4-dihydroxy-2-butanone 4-phosphate synthase, RibBInterproscan
IPR000897DomainSignal recognition particle, SRP54 subunit, GTPase domainInterproscan
IPR000926FamilyGTP cyclohydrolase II, RibAInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR004125DomainSignal recognition particle, SRP54 subunit, M-domainInterproscan
IPR004780FamilySignal recognition particle proteinInterproscan
IPR013822DomainSignal recognition particle SRP54, helical bundleInterproscan
IPR017945Homologous_superfamilyDHBP synthase RibB-like alpha/beta domain superfamilyInterproscan
IPR022941FamilySignal recognition particle, SRP54 subunitInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR032677DomainGTP cyclohydrolase IIInterproscan
IPR036144Homologous_superfamilyGTP cyclohydrolase II superfamilyInterproscan
IPR036891Homologous_superfamilySignal recognition particle, SRP54 subunit, M-domain superfamilyInterproscan
IPR042101Homologous_superfamilySignal recognition particle SRP54, N-terminal domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11564SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0003935Molecular FunctionGTP cyclohydrolase II activityInterproscan
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membraneInterproscan
GO:0008312Molecular Function7S RNA bindingInterproscan
GO:0008686Molecular Function3,4-dihydroxy-2-butanone-4-phosphate synthase activityInterproscan
GO:0009231Biological Processriboflavin biosynthetic processInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0048500Cellular Componentsignal recognition particleInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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