| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8045893.1 | JITTERBUG, ISOFORM N | contig_6409_pilon | 6299 | 21847 | + |
| CDS | |||||
| CAI8045893.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8045893.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00307 | CH | Calponin homology (CH) domain | Domain | Interproscan |
| PF00623 | RNA_pol_Rpb1_2 | RNA polymerase Rpb1, domain 2 | Domain | Interproscan |
| PF00630 | Filamin | Filamin/ABP280 repeat | Domain | Interproscan |
| PF04983 | RNA_pol_Rpb1_3 | RNA polymerase Rpb1, domain 3 | Domain | Interproscan |
| PF04997 | RNA_pol_Rpb1_1 | RNA polymerase Rpb1, domain 1 | Domain | Interproscan |
| PF04998 | RNA_pol_Rpb1_5 | RNA polymerase Rpb1, domain 5 | Domain | Interproscan |
| PF05000 | RNA_pol_Rpb1_4 | RNA polymerase Rpb1, domain 4 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000722 | Domain | RNA polymerase, alpha subunit | Interproscan |
| IPR001298 | Repeat | Filamin/ABP280 repeat | Interproscan |
| IPR001589 | Conserved_site | Actinin-type actin-binding domain, conserved site | Interproscan |
| IPR001715 | Domain | Calponin homology domain | Interproscan |
| IPR006592 | Domain | RNA polymerase, N-terminal | Interproscan |
| IPR007066 | Domain | RNA polymerase Rpb1, domain 3 | Interproscan |
| IPR007080 | Domain | RNA polymerase Rpb1, domain 1 | Interproscan |
| IPR007081 | Domain | RNA polymerase Rpb1, domain 5 | Interproscan |
| IPR007083 | Domain | RNA polymerase Rpb1, domain 4 | Interproscan |
| IPR013783 | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR014756 | Homologous_superfamily | Immunoglobulin E-set | Interproscan |
| IPR015699 | Domain | DNA-directed RNA pol I, largest subunit, N-terminal domain | Interproscan |
| IPR017868 | Repeat | Filamin/ABP280 repeat-like | Interproscan |
| IPR036872 | Homologous_superfamily | CH domain superfamily | Interproscan |
| IPR038120 | Homologous_superfamily | RNA polymerase Rpb1, funnel domain superfamily | Interproscan |
| IPR042102 | Homologous_superfamily | RNA polymerase Rpb1, domain 3 superfamily | Interproscan |
| IPR044801 | Family | Filamin family | Interproscan |
| IPR044893 | Homologous_superfamily | RNA polymerase Rpb1, clamp domain superfamily | Interproscan |
| IPR047107 | Domain | DNA-directed RNA pol I, largest subunit, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR38537 | JITTERBUG, ISOFORM N | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003899 | Molecular Function | DNA-directed 5'-3' RNA polymerase activity | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006351 | Biological Process | DNA-templated transcription | Interproscan |
| GO:0030036 | Biological Process | actin cytoskeleton organization | Interproscan |
| GO:0051015 | Molecular Function | actin filament binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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