| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8041311.1 | RADICAL SAM DOMAIN PROTEIN | contig_5466_pilon | 20203 | 21342 | - |
| CDS | |||||
| CAI8041311.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8041311.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04055 | Radical_SAM | Radical SAM superfamily | Domain | Interproscan |
| PF13186 | SPASM | Iron-sulfur cluster-binding domain | Domain | Interproscan |
| PF13353 | Fer4_12 | 4Fe-4S single cluster domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000385 | Conserved_site | MoaA/NifB/PqqE, iron-sulphur binding, conserved site | Interproscan |
| IPR006638 | Domain | Elp3/MiaA/NifB-like, radical SAM core domain | Interproscan |
| IPR007197 | Domain | Radical SAM | Interproscan |
| IPR011843 | Family | Coenzyme PQQ biosynthesis protein E, bacteria | Interproscan |
| IPR013785 | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR017200 | Family | Coenzyme PQQ synthesis protein E-like | Interproscan |
| IPR023885 | Domain | 4Fe4S-binding SPASM domain | Interproscan |
| IPR050377 | Family | Radical SAM superfamily enzymes | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11228 | RADICAL SAM DOMAIN PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity | Interproscan |
| GO:0018189 | Biological Process | pyrroloquinoline quinone biosynthetic process | Interproscan |
| GO:0046872 | Molecular Function | metal ion binding | Interproscan |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding | Interproscan |
| GO:0051539 | Molecular Function | 4 iron, 4 sulfur cluster binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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