Gene detail

Detailed information of CAI8036766.1 in Geodia barretti Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
CAI8036766.1	DNA TOPOISOMERASE, TYPE IA, CORE	contig_4640_pilon	26065	30618	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00557	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan
PF00589	Phage_integrase	Phage integrase family	Family	Interproscan
PF01131	Topoisom_bac	DNA topoisomerase	Family	Interproscan
PF01220	DHquinase_II	Dehydroquinase class II	Domain	Interproscan
PF01321	Creatinase_N	Creatinase/Prolidase N-terminal domain	Domain	Interproscan
PF01396	zf-C4_Topoisom	Topoisomerase DNA binding C4 zinc finger	Domain	Interproscan
PF01751	Toprim	Toprim domain	Family	Interproscan
PF02899	Phage_int_SAM_1	Phage integrase, N-terminal SAM-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000380	Family	DNA topoisomerase, type IA	Interproscan
IPR000587	Domain	Creatinase, N-terminal	Interproscan
IPR000994	Domain	Peptidase M24	Interproscan
IPR001131	Conserved_site	Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site	Interproscan
IPR001874	Family	Dehydroquinase, class II	Interproscan
IPR002104	Domain	Integrase, catalytic domain	Interproscan
IPR003601	Domain	DNA topoisomerase, type IA, domain 2	Interproscan
IPR003602	Domain	DNA topoisomerase, type IA, DNA-binding domain	Interproscan
IPR004107	Domain	Integrase, SAM-like, N-terminal	Interproscan
IPR006171	Domain	TOPRIM domain	Interproscan
IPR010998	Homologous_superfamily	Integrase/recombinase, N-terminal	Interproscan
IPR011010	Homologous_superfamily	DNA breaking-rejoining enzyme, catalytic core	Interproscan
IPR013497	Domain	DNA topoisomerase, type IA, central	Interproscan
IPR013498	Domain	DNA topoisomerase, type IA, zn finger	Interproscan
IPR013762	Homologous_superfamily	Integrase-like, catalytic domain superfamily	Interproscan
IPR013824	Homologous_superfamily	DNA topoisomerase, type IA, central region, subdomain 1	Interproscan
IPR013825	Homologous_superfamily	DNA topoisomerase, type IA, central region, subdomain 2	Interproscan
IPR013826	Homologous_superfamily	DNA topoisomerase, type IA, central region, subdomain 3	Interproscan
IPR018509	Conserved_site	Dehydroquinase, class II, conserved site	Interproscan
IPR023405	Homologous_superfamily	DNA topoisomerase, type IA, core domain	Interproscan
IPR023406	Active_site	DNA topoisomerase, type IA, active site	Interproscan
IPR029149	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR036005	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR036441	Homologous_superfamily	Dehydroquinase, class II superfamily	Interproscan
IPR044068	Domain	Core-binding (CB) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42785	DNA TOPOISOMERASE, TYPE IA, CORE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003855	Molecular Function	3-dehydroquinate dehydratase activity	Interproscan
GO:0003916	Molecular Function	DNA topoisomerase activity	Interproscan
GO:0003917	Molecular Function	DNA topoisomerase type I (single strand cut, ATP-independent) activity	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0006265	Biological Process	DNA topological change	Interproscan
GO:0006310	Biological Process	DNA recombination	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-