| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8029878.1 | WD40 REPEAT PROTEIN | contig_346_pilon | 69301 | 71295 | - |
| CDS | |||||
| CAI8029878.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8029878.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF04542 | Sigma70_r2 | Sigma-70 region 2 | Domain | Interproscan |
| PF04545 | Sigma70_r4 | Sigma-70, region 4 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000838 | Conserved_site | RNA polymerase sigma factor 70, ECF, conserved site | Interproscan |
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR007627 | Domain | RNA polymerase sigma-70 region 2 | Interproscan |
| IPR007630 | Domain | RNA polymerase sigma-70 region 4 | Interproscan |
| IPR011047 | Homologous_superfamily | Quinoprotein alcohol dehydrogenase-like superfamily | Interproscan |
| IPR013324 | Homologous_superfamily | RNA polymerase sigma factor, region 3/4-like | Interproscan |
| IPR013325 | Homologous_superfamily | RNA polymerase sigma factor, region 2 | Interproscan |
| IPR014284 | Domain | RNA polymerase sigma-70 like domain | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR020472 | Repeat | G-protein beta WD-40 repeat | Interproscan |
| IPR036388 | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22847 | WD40 REPEAT PROTEIN | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003700 | Molecular Function | DNA-binding transcription factor activity | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006352 | Biological Process | DNA-templated transcription initiation | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0016987 | Molecular Function | sigma factor activity | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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