| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8020873.1 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 | contig_2044_pilon | 32772 | 82375 | - |
| CDS | |||||
| CAI8020873.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8020873.1 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Other|Beta-prp |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|CDC20 |
| Ubiquitin Family | E3|E3 adaptor Cullin RING|DWD |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00400 | WD40 | WD domain, G-beta repeat | Repeat | Interproscan |
| PF07719 | TPR_2 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF13181 | TPR_8 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF13432 | TPR_16 | Tetratricopeptide repeat | Repeat | Interproscan |
| PF16699 | CSTF1_dimer | Cleavage stimulation factor subunit 1, dimerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001680 | Repeat | WD40 repeat | Interproscan |
| IPR011990 | Homologous_superfamily | Tetratricopeptide-like helical domain superfamily | Interproscan |
| IPR013105 | Repeat | Tetratricopeptide repeat 2 | Interproscan |
| IPR015943 | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR019734 | Repeat | Tetratricopeptide repeat | Interproscan |
| IPR019775 | Conserved_site | WD40 repeat, conserved site | Interproscan |
| IPR031101 | Family | RNA polymerase-associated protein Ctr9 | Interproscan |
| IPR032028 | Domain | Cleavage stimulation factor subunit 1, dimerisation domain | Interproscan |
| IPR036322 | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR038184 | Homologous_superfamily | CSTF1, dimerization domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14027 | RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000993 | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0005515 | Molecular Function | protein binding | Interproscan |
| GO:0006355 | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0006368 | Biological Process | transcription elongation by RNA polymerase II | Interproscan |
| GO:0016593 | Cellular Component | Cdc73/Paf1 complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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