Detailed information of CAI8017952.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8017952.1TRYPTOPHAN SYNTHASE-RELATEDcontig_165_pilon3986643910+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00291PALPPyridoxal-phosphate dependent enzymeFamilyInterproscan
PF01565FAD_binding_4FAD binding domain DomainInterproscan
PF028262-Hacid_dh_CD-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domainDomainInterproscan
PF02913FAD-oxidase_CFAD linked oxidases, C-terminal domainDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001926DomainTryptophan synthase beta chain-like, PALP domainInterproscan
IPR004113DomainFAD-binding oxidoreductase/transferase, type 4, C-terminalInterproscan
IPR006094DomainFAD linked oxidase, N-terminalInterproscan
IPR006140DomainD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domainInterproscan
IPR006653Conserved_siteTryptophan synthase, beta chain, conserved siteInterproscan
IPR006654FamilyTryptophan synthase, beta chainInterproscan
IPR016164Homologous_superfamilyFAD-linked oxidase-like, C-terminalInterproscan
IPR016166DomainFAD-binding domain, PCMH-typeInterproscan
IPR016169Homologous_superfamilyFAD-binding, type PCMH, subdomain 2Interproscan
IPR016171Homologous_superfamilyVanillyl-alcohol oxidase, C-terminal subdomain 2Interproscan
IPR023026FamilyTryptophan synthase beta chain/beta chain-likeInterproscan
IPR029753Conserved_siteD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved siteInterproscan
IPR036052Homologous_superfamilyTryptophan synthase beta chain-like, PALP domain superfamilyInterproscan
IPR036291Homologous_superfamilyNAD(P)-binding domain superfamilyInterproscan
IPR036318Homologous_superfamilyFAD-binding, type PCMH-like superfamilyInterproscan
IPR043322FamilyC-terminal binding proteinInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR48077TRYPTOPHAN SYNTHASE-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000162Biological Processtryptophan biosynthetic processInterproscan
GO:0003714Molecular Functiontranscription corepressor activityInterproscan
GO:0003824Molecular Functioncatalytic activityInterproscan
GO:0004834Molecular Functiontryptophan synthase activityInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006568Biological Processtryptophan metabolic processInterproscan
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorInterproscan
GO:0050660Molecular Functionflavin adenine dinucleotide bindingInterproscan
GO:0051287Molecular FunctionNAD bindingInterproscan
GO:0071949Molecular FunctionFAD bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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