| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI8015126.1 | PESCADILLO - RELATED | contig_15482_pilon | 6381 | 15090 | + |
| CDS | |||||
| CAI8015126.1 | |||||
| Transcript |
| - |
| Protein |
| CAI8015126.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01336 | tRNA_anti-codon | OB-fold nucleic acid binding domain | Domain | Interproscan |
| PF04057 | Rep-A_N | Replication factor-A protein 1, N-terminal domain | Domain | Interproscan |
| PF06732 | Pescadillo_N | Pescadillo N-terminus | Family | Interproscan |
| PF08646 | Rep_fac-A_C | Replication factor-A C terminal domain | Family | Interproscan |
| PF16900 | REPA_OB_2 | Replication protein A OB domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001357 | Domain | BRCT domain | Interproscan |
| IPR004365 | Domain | OB-fold nucleic acid binding domain, AA-tRNA synthetase-type | Interproscan |
| IPR004591 | Family | Replication factor A protein 1 | Interproscan |
| IPR007199 | Domain | Replication factor-A protein 1, N-terminal | Interproscan |
| IPR010613 | Family | Pescadillo | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR013955 | Domain | Replication factor A, C-terminal | Interproscan |
| IPR031657 | Domain | Replication protein A, OB domain | Interproscan |
| IPR036420 | Homologous_superfamily | BRCT domain superfamily | Interproscan |
| IPR047192 | Domain | Replication factor A, C-terminal, eukaryotes | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12221 | PESCADILLO - RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000463 | Biological Process | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | Interproscan |
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003677 | Molecular Function | DNA binding | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0005730 | Cellular Component | nucleolus | Interproscan |
| GO:0006260 | Biological Process | DNA replication | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006310 | Biological Process | DNA recombination | Interproscan |
| GO:0042254 | Biological Process | ribosome biogenesis | Interproscan |
| GO:0070545 | Cellular Component | PeBoW complex | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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