Detailed information of CAI8011034.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8011034.1PSEUDOURIDYLATE SYNTHASEcontig_13934_pilon2339224595+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00572Ribosomal_L13Ribosomal protein L13FamilyInterproscan
PF01416PseudoU_synth_1tRNA pseudouridine synthaseDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001406FamilyPseudouridine synthase I, TruAInterproscan
IPR005822FamilyLarge ribosomal subunit protein uL13Interproscan
IPR005823FamilyLarge ribosomal subunit protein uL13, bacterial-typeInterproscan
IPR020094Homologous_superfamilyPseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalInterproscan
IPR020095Homologous_superfamilyPseudouridine synthase I, TruA, C-terminalInterproscan
IPR020097DomainPseudouridine synthase I, TruA, alpha/beta domainInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR023563Conserved_siteLarge ribosomal subunit protein uL13, conserved siteInterproscan
IPR036899Homologous_superfamilyLarge ribosomal subunit protein uL13 superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR11142PSEUDOURIDYLATE SYNTHASEInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003735Molecular Functionstructural constituent of ribosomeInterproscan
GO:0005840Cellular ComponentribosomeInterproscan
GO:0006412Biological ProcesstranslationInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0031119Biological ProcesstRNA pseudouridine synthesisInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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