Gene detail

Detailed information of CAI8008734.1 in Geodia barretti Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
CAI8008734.1	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	contig_13320_pilon	54324	69490	+

Gene Structure

More details in Jbrowse Sequence

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00435	Spectrin	Spectrin repeat	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002017	Repeat	Spectrin repeat	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054	Cellular Component	cell junction	Interproscan
GO:0030864	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995	Cellular Component	cell projection	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

TOP

Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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