Gene detail

Detailed information of CAI8006242.1 in Geodia barretti Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
CAI8006242.1	COLLAGEN ALPHA	contig_12496_pilon	22592	39630	+

Gene Structure

More details in Jbrowse Sequence

CDS

CAI8006242.1

MQNRDCKQLKMNTRFVYNYIIVFVLPWALEAFPTPSVDCESLPQASYPFCDPNLSPEERATDLVSRLTQEELVGQTSSIAAAITRLGINAYNWRSNCLHGWALSGGPDWLGYTWTVFPVPIGLAATFDRNLILQVAQVTSTEGRALHNEVMSHYNGASQEASGLNCFSPNVNLLRDPRWGRASETFGEDPYLISQLSVAYTKGIQEGSDPTYVKVAACPKHYAVHSGPDQLRSVFTANVTLHDLYDTYLPAFKSQVVGGKAMQIMPAYSGVRCKGEPDGAPDAANPFLLQTVLREEFGGANISVCSDNGGVAEVYSTHHFAASLEEAAALCMNASTDLDLGGDKVYPKYLPLAIKDSLVNIDTIRQAVWRSFYLRIRVGDFDPVSLVPYQWINASQLNTPESQAINLKVALESIVLLKNSGHLPLNIAEAKNIAVIGPNANSSAVLISDYEGIPAFVTTVYDGIKNTGIAAEYAPGCSDVTCSNQKGFDDVLKIVRDADYVVAVMGLDGSVEGEGHDRAHTTCDSEPIDNIALPGCQTALIEAVTSINPRVILVFLNGGPVSIPNLYENKGVLAVIEAFYPGPLGGTAVADVIFGKYNPGGKLPITIFNSTNDVPVATDYNMTTPPGRTYRYYTGRPLFPFGYGLSYTSFKYSQLVLSVNSIEVCSSVNVKVSVQNVGDVQGDEVIQIYVEPPRISGKPFIPNTQLVGFERVGLAPSASHTGNYEVNAYSLSLVDEDGEHYVFPGQYTVVATGGVGDRLTASFSITGPITNVKDFLASVQSYTHSLLPTQDHREPPISKLSRCLKHNDTQISERLAEFCTRYEVTPKAETVTSHVLLGFYSYFLSVSPSLNFADERKSKIVFQEENYTFRGFILVSEQKLQQVPPLSVWQRGCNYTVTVEPLEEAVLEFTKLQALLFEEYLFNDLLQLFDFTHVLKGLDASMLFIPKFSKEGGQVLAMSSVLRWLMAVRIPLPPYLETQLKGNTESDTSKMTSGLIVTNPHLRPSSIRVDRLEWSRQRNGKGRPNIIHFSSVFNEDHKAGHDVEELFRASSKELMLSISTENFILTGLYTDIVEDALFLPLMLNHILYHKSLLKLEKKLNYSFRDRQLLERALTEPSYSQLYTVLAEQVKVTASNCGIRRPLVRAGKSVKSETNVQDLNQRLKDCGKTNTEKLEIRKYLLARDAVHSASEKQRDLLDKNPQPSDSATEEPSATSLDADAHMYANHLEAILGAVYLDGGLSATQQLIAQLFFPERDHPAGDRHMIPHSPILQKLVHLEESTGVEFRHIRLLAKAFTHSSMQYSHLVGGNYEKLEHLGDAVLQFLVSDYLYRKFPTFHEGQFSLLRASLVQNKQLAQLCKELGFDQYIRYEGTEVGTKILADVVESYVAALLLDMGLDYCQKFLQTQVVGQPPPPSGTPADPTDPTISGLPQAPIPYDPYYYPFTNPYYNPYDPYQTWPDPLCTGPPGHPGPQGPRGHPGPAGRPGRSGFPGEKGRSGRPGPVGHDGMAGGKGVSGYPGPPGHPGLPGDQGRKGEEGEEGSQGHTGASGRQGPQALPGARGPPGHKGVKGARGMKGRQSDRGPNGDPGRKGEPGTPGIGGFKGLVGLIGSPGVHGKEGPMGYTGPQGPPGTAGGQGPRGPEGPKGRSGPIGPPGRPGVPGRIGEPGPDGEIGPPGPRGHTGLTGSKGPKGRQGPVGREGEMGLKGVMGHPGPRGEKGERGRTGDGGTKGRKGELGYPGFPGIQGDPGLDGDPGRPGSPGDMGPPGDDGFPGPMVNTNTTWFMSCVSRISIIVWTGSSRALPGILVQTDDLDLWVLMGSQVLQAIQESLGPRQGLPGFSGPPGKPGAPGIKGEIGLNGIPGSPGRKGPPGPLGHQGRKGSIGPKGFRGVPGPTGAPGVKGYRGSVGIPGHTGEKGPLGSPGHDGENGLPGPPGMKGGRGISGPQGIIGPLGPKGQKGTQGPKGHKGEPGNKGLQGATGIPGTTGVMGGKGVKGDPGFRGERGKKGDLGERGIPGNPGPNGAPGADGAPGLMGPKGVLGPPGNRGRPGHDGRAGLVGTKGEKGAPAADGAPGRTGPKGLPGFKGKSATTGPQGPKGELGPQGNKGEKARKGEDGLNGGRGPKGKPGRPGVKGVRGFPGPKGRRGDMGDRGILGLDGTAGTDGLPGAKGKTGEEGERGDKGDKGLSGHKGKKGLAGPKGFEGSKGEQGPIGLAGIKGTTGITGLRGDDGDHGRHGMPGVPGPAGRQGPPGGVGIKGVNGATGDTGERGYKGVEGPPGEPGVQGFEGPQGRRGPTSDRGPKGYPGEDGDGGSPGPKGGRGLKGFKGGKGLIGPPGLPSPKGQKGKKGPPGPIGPIGRQGGHGNPGLQGLSGLNGPPGMPGFPGLEGDHGEQGGKGVRGPPGPPGRRGTQGAHGQKGKRGSRGAPGLRGDLGDFGVGGRMGFPGNRGYMGQTGYVGRPGRPGNDGLDGYPGFQGNPGYKGLKGYRAAKGQTGPKGPKGPPGQVKHHYISDLASEHIYEPGRLPLPSLDKMIKELVFSESGRETSVTVPRCLMMLDSPSAGLERRLPAHSCQHVCLHHTNSTAGLYWIDPNLGCSSDAVQVFCNCSSRQTCVLPNTTVTLDVPWSLKRQLSTVQLDTTLSSIQLYQVHYSVDRVQFKQLQLMSSKASQTVVHRYYLKRQLVPQALIFDGGGGEVPGVLVREFGGRLRQLRVTELRGHKNCPIFFEQPPEHPDWSCSVYELDSESLSFFDTDALPLLDLALVHRDASSLQHNRLEIGPVCFAGG

Transcript

Protein

CAI8006242.1

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00933	Glyco_hydro_3	Glycosyl hydrolase family 3 N terminal domain	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF01915	Glyco_hydro_3_C	Glycosyl hydrolase family 3 C-terminal domain	Domain	Interproscan
PF14310	Fn3-like	Fibronectin type III-like domain	Family	Interproscan
PF14622	Ribonucleas_3_3	Ribonuclease-III-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR000999	Domain	Ribonuclease III domain	Interproscan
IPR001764	Domain	Glycoside hydrolase, family 3, N-terminal	Interproscan
IPR002772	Domain	Glycoside hydrolase family 3 C-terminal domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR026891	Domain	Fibronectin type III-like domain	Interproscan
IPR036389	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR036881	Homologous_superfamily	Glycoside hydrolase family 3 C-terminal domain superfamily	Interproscan
IPR036962	Homologous_superfamily	Glycoside hydrolase, family 3, N-terminal domain superfamily	Interproscan
IPR050149	Family	Collagen superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24023	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004525	Molecular Function	ribonuclease III activity	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0030020	Molecular Function	extracellular matrix structural constituent conferring tensile strength	Interproscan
GO:0030198	Biological Process	extracellular matrix organization	Interproscan
GO:0031012	Cellular Component	extracellular matrix	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-