Detailed information of CAI8004448.1 in Geodia barretti Gene info
Gene IDAnnotationScaffoldStartEndStrand
CAI8004448.1MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBERcontig_12097_pilon23273379+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00587tRNA-synt_2btRNA synthetase class II core domain (G, H, P, S and T)DomainInterproscan
PF04073tRNA_editAminoacyl-tRNA editing domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002314DomainAminoacyl-tRNA synthetase, class II (G/ P/ S/T)Interproscan
IPR002316FamilyProline-tRNA ligase, class IIaInterproscan
IPR004500FamilyProlyl-tRNA synthetase, class IIa, bacterial-typeInterproscan
IPR006195DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR007214DomainYbaK/aminoacyl-tRNA synthetase-associated domainInterproscan
IPR036754Homologous_superfamilyYbaK/aminoacyl-tRNA synthetase-associated domain superfamilyInterproscan
IPR045864Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR050062FamilyProline-tRNA synthetaseInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR42753MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000166Molecular Functionnucleotide bindingInterproscan
GO:0002161Molecular Functionaminoacyl-tRNA editing activityInterproscan
GO:0004812Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0004827Molecular Functionproline-tRNA ligase activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0006418Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0006433Biological Processprolyl-tRNA aminoacylationInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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