| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CAI7989718.1 | PSEUDOURIDYLATE SYNTHASE | contig_1011_pilon | 27005 | 28817 | + |
| CDS | |||||
| CAI7989718.1 | |||||
| Transcript |
| - |
| Protein |
| CAI7989718.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00380 | Ribosomal_S9 | Ribosomal protein S9/S16 | Family | Interproscan |
| PF00572 | Ribosomal_L13 | Ribosomal protein L13 | Family | Interproscan |
| PF01416 | PseudoU_synth_1 | tRNA pseudouridine synthase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000754 | Family | Small ribosomal subunit protein uS9 | Interproscan |
| IPR001406 | Family | Pseudouridine synthase I, TruA | Interproscan |
| IPR005822 | Family | Large ribosomal subunit protein uL13 | Interproscan |
| IPR005823 | Family | Large ribosomal subunit protein uL13, bacterial-type | Interproscan |
| IPR014721 | Homologous_superfamily | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Interproscan |
| IPR020094 | Homologous_superfamily | Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal | Interproscan |
| IPR020095 | Homologous_superfamily | Pseudouridine synthase I, TruA, C-terminal | Interproscan |
| IPR020097 | Domain | Pseudouridine synthase I, TruA, alpha/beta domain | Interproscan |
| IPR020103 | Homologous_superfamily | Pseudouridine synthase, catalytic domain superfamily | Interproscan |
| IPR020568 | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR020574 | Conserved_site | Small ribosomal subunit protein uS9, conserved site | Interproscan |
| IPR036899 | Homologous_superfamily | Large ribosomal subunit protein uL13 superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11142 | PSEUDOURIDYLATE SYNTHASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0001522 | Biological Process | pseudouridine synthesis | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0003735 | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 | Cellular Component | ribosome | Interproscan |
| GO:0006412 | Biological Process | translation | Interproscan |
| GO:0009451 | Biological Process | RNA modification | Interproscan |
| GO:0009982 | Molecular Function | pseudouridine synthase activity | Interproscan |
| GO:0031119 | Biological Process | tRNA pseudouridine synthesis | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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