Gene detail

Detailed information of Bpl_scaf_9971-4.5 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9971-4.5	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	Bpl_scaf_9971	432390	434417	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_9971-4.5

ATGAACGACTTCCAAAGTATCTATGATCAGGTGATTACAGAATTGAAAGTGGAGAAAATTTATGACCAGACACTTTTAAAATTCATAGAATGTAGAGTGAACCAAGATAGAGTTCAGTTTGTTTCACAGTTAGAAACTATTAAAAAACATCTTAATATAAAACCATCAAGTAAGCTGAAGTCAGCAGATTTATCAACCAAACTAAGGAACGAAGGTAATAAATTCTTTCAGACAAGAGAATACCAAAAGGCACTAGACAAATACAATCAGAGCGTGACGTCTGCTCCAATTGAGGCTAAATTTGGGATTTGTGCTATTGAGCTAAAGGGAAATAATTTGGAATTGTCTTATGCATTAGCTAACCGTTCAGCAGTTTTCTTTCATCAGAAACATTATGATCTTTGTTTGAATGACATTGATTATGCAATTCAAAATAAATATCCAAAAGTATTGATTTACAAATTACATGAAAGAAGAGCTAAGTGTTACGTTGAGCTCCAAGCTTGGCAAAAGTCTGTTGAATCATTCCAGAAAGCAATGGATACATTACCAGATGCAAATCTTGAAGAGAAAAAGTTAGAAAATGTCAGAAATTCAATTGAAAAACAAATTGGAAAAATTCAGAAAAATGAATCAAATGAGATATACAATTCTGCAGTTACGACAACTAAGGAATACCACCAATTTCATGGACCTCTACCAACTATTGTTAATAAAAGTAAAATATTCCCTTGTGCTTCTGATGCTGTTGGCATCACTGCAGATGATGTTACAGAATTTGGTCTTGCTGCCACACAAGATATTTTGGTTGGGGAATCTCTTATAGTAGAAAAAGCCTACACGTCCATCATTCTTCCAAAATTTGATACAATATACTGCCATCATTGTTGTCAAAGAGTTATTTCAGTGTTTCCATGTCATCAGTGTAGTGAAGTTGTCTTTTGTGGCTTGAAATGTTGCAAGGAGTCATGGGAAATGTACCATTGTATGGAATGCGTCTGTTTGGGAACAGTAAAACAGGCTGATCTTGGTCTCGGTTATTTAGCATTGAAAATGGTTCTGAAAGCAGGACTACCTACAGTTATACTTTATAAAAGTAAAGAACTCATTGATGGTTGCCAGAGATCTGTTGGATTTAATGACAATGGCGTTTATGATCCAGAAGATTACAACAGTGTATACCATTTGGTCAATCACAGTGAGAAACGAACACCTGAGGATCTTTTCAAACGTTCTTTTCAAGCTTATTTTCTTCTAAAATGCTTGGAGGAAACCAATTTTTTCACTAAAGACGGAATTTATACATCTTCAGATGATAAAAACTATGTAGCAGGACACATATTACGTCATATAATGATGTTACCATGCAATGCTCATGAAGTATCAGAATTGGCATTAAACCTGGAATGTCTTCCAGAATCGGAGACGAAGGAAATTGGATCAGGAATTTATCCCACACTCAGTTTGATTAATCATTCATGTGATCCTAATGTTGTCAGGCACTCGTATGGGGACACTTGTGTTGTACGAGCTATTAAAAATATTACAGAAGGTGAAGAAATTGTAGATAATTATGGAGCTCTTTACCCATTGACCGTGCGATCTGAGAGGAGGATTACATTAGAACCACAGTATTATTTCAAATGCAATTGTCAGGCCTGCCGAGAGGATTGGCCATTGTATTTCAACATCAATGTGGATGTTCCAAGATTTAAATGTCAGGAATGTCATGGACCTGTTGTTATACCTCTTGACAAGAGGACAGAAAACTCTTTCTGTATACAATGTAAACAAAAACAGGATATAACAGATATCATTGTAAAACTGCACCAGTCTCAGACAGACTATAAGAATATTTTAGAGCAGGTCTTGAGAGGTGAAAAGTTGCAAGAGGCCCTTCCAAAGCTAGAAACTTATCTACAGTTTCTATACAAAACTGTTTGTACACCATGGCAGGATTGTAACAATTGTCAAGAGGCAATCAAACAGTGTTATGCAGTTAAAGCAAGTTGTTACATTGCTAACTGA

Transcript

Bpl_scaf_9971-4.5

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001214	Domain	SET domain	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR044421	Domain	SMYD4, SET domain	Interproscan
IPR046341	Homologous_superfamily	SET domain superfamily	Interproscan
IPR052097	Family	SET and MYND domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46165	SET AND MYND DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0042826	Molecular Function	histone deacetylase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_9971-4.5 global RNA-seq network