Gene detail

Detailed information of Bpl_scaf_9649-0.4 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9649-0.4	RESPIRATORY NITRATE REDUCTASE	Bpl_scaf_9649	36964	83144	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_9649-0.4

AAATTTCCAAATTGTATACTTCCTGTAAACTTGTCCAAGATCAGTATGTTGCGGCTTTGGCCCCTGAGTCGGGTCTTAGCACCCAGAACAACAGGGGCACTTTCTGTGCGTAGTAATACAACAGCTTCAGATTTAGTAGAGTTGTTTGTCGATGATAAACAAATATTTGTACCACCTGGAACAACAATATTACAGGCATGCGCTCATGCAGGTGTTCAGATTCCAAGATTTTGTTACCATGACAGACTATCTGTTGCTGGAAATTGTAGGATGTGTCTAGTAGAGATAGAAAAGACACCTAAGCCGGTTGCCTCTTGTGCAATGCCAGTAATGAAAGGAATAAGGGTGAAGACAGATTCACCTTTTACAAGAAAGGCTAGGGAAGGAGTGATGGAGTTTTTGTTGATGAATCATCCTTTAGATTGTCCTATTTGTGATCAGGGTGGAGAATGTGATTTACAGGATCAGTCAATGGCATTTGGAAGTGACAGAAGCAGATTTACAGATATTAATTTTACAGGAAAAAGAGCTGTAGAAGACAAGAACGTTGGTCCATTGGTTAAGACAATAATGACCAGATGTATTCATTGTACAAGATGTATTAGGTTTGCTAGTGAAGTAGCTGGTGTAGAAGATTTGGGTACAACAGGTAGAGGAGGGGACATGCAAGTTGGTACATATGTAGAGAAAATGATCAAGTCAGAACTGTCTGGAAATGTCATTGATCTGTGTCCTGTTGGAGCTTTAACATCAAAGCCATATGCCTTTACATCAAGACCATGGGAGACTAGGATATTAACGAAGAATGGATTTCTGACAAGACAAGGTGATAACATCGCAGCTGTCACCGGTGGATTTGTAGATGCTGAAGCACTGGTCTCTCTGAAAGATCTAATGAATAAACTGGGAAGTGAAAGTCTGTGTACAGAAGAGATATTTCCTATGGATGGGGCAGGAACTGATTTGAGATCAAATTACCTGTTGAATACTAAGATAACTGGTGTAGAAGAAGCTGACCTGATTTTGTTGGTCGGGACTAATCCTAGATTTGAAGCTCCACTCTTCAATGCCAGGATGAGAAAAGGCTGGGTCCACAATGATCTTGAAGTAGCTATGGTTGGACCTAAAGTTGACATTACATTTGAACATGAGCATCTTGGTGACAGCACTCAAGTATTACAGGAAATTGCTAGTGGTAAACACCCTTTCAGCAAGAAATTGAACAGTGCCAAGAATCCAATGGTTGTTGTAGGAAGCTCAATCTTACAGAGGAAAGATGGTAGTGCTATACATGCTGCTGTGGCAGAGATTGCCCAGAATGCACGGGTTAAAAGTGGATGTGGAGAAGATTGGAAAGTCTTAAATGTTCTTCACAGAGTAGCCAGTCAAGTGGCAGCACTAGACCTGGGTTATAAAGCAGGTGTAGATTACATCAGACAGAACCCTCCTAAAGTCTTGTATTTATTGGGGGCTGATGAGGGAGCTTTAACCAAGGAAGATATACCTAAAGATTGTTTTGTTATTTATCAAGGTCACCATGGTGACAGAGGTGCAGCCATTGCCGATGTTATTTTACCAGGAGCTGCATATACAGAAAAGGATGGCACATATGTAAATACAGAAGGTCGTTCACAACAAACAAGAGTGGCTGTAACACCACCAGGTCTAGCCAGAACAGACTGGAAGATCATCAGAGCTTTATCAGAGGTGATAGGAGCTACACTTCCTTATGAGAATATAGATGAAATCAGAATGAGGTTGACGGAAGTGTCGCCAAACTTAACAAGATATGATGACGTAGAAGATGCTAACTATTTCTCGCAGGCTCAACAGCTGTCAAAATTGGCAAAAACATCATTAGAGTCTTCACCTCTCAAGGTCAACCAATTGTTGTTAAAGGATTTCTATATGACAGACTCAATAACACGAGCTTCACAAACAATGGCCAAATGTGTACAGGCAGCCACTGAAGCAGAGACAGGCAAATACTGAACATTTCTGAAATCTGAAAGATCTCTACAGAGTCAAAAATAACTGTGTGATATTACTGTGTGTCATTCAAAAAAACTGAAAATGGGGAATTTTTATCAAAGGGAGTAAATATTGATATTATCAACATTAACCCCTTTTGTATAGTGCTAAATCAATGGTCTATTTTGTGATTTAGGAAAAAACAAGTATACATATTTTGTAACATCAAGATGGGGGTAGATGCCCTTATTTCTTCAAGTTAACAACACTAAGTGATGACCTGTTCTTAGTCAGTGTCTTGTTATAATGATCCTGTTGTTTTTGTTGTAAAGATACTGTATTTGACTTCATTGTGATAATATTTTATTCACAATAAATGCATTTTGATGAAATTCATATTTAGTTTAAACTTGTTATGTTTTCAGTTTTTTTAAATATTTTTTTTTCTCGAAAAATCATTTCTTGTCAGCGATAAACATGAAAAATACCAGCTTGATAGCAATAATATATACATATTAAGCACAGAATCTTTCGTTTAAATTTTGTTCTGTTTTATGTAATAATATTTTTGCCAAATCCTTTTGTAAAGAACAACAAAAAATCATGTTGTTTATGATACATTTACATCTTCTCTGTGTAGTGATATTTATAACAATGAAAATGACACAGTTGATTAATAAAATATAATATAATGATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00384	Molybdopterin	Molybdopterin oxidoreductase	Family	Interproscan
PF09326	NADH_dhqG_C	NADH-ubiquinone oxidoreductase subunit G, C-terminal	Family	Interproscan
PF10588	NADH-G_4Fe-4S_3	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region	Domain	Interproscan
PF13510	Fer2_4	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000283	Conserved_site	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	Interproscan
IPR001041	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR006656	Domain	Molybdopterin oxidoreductase	Interproscan
IPR015405	Domain	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like	Interproscan
IPR019574	Domain	NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding	Interproscan
IPR036010	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR050123	Family	Prokaryotic molybdopterin-containing oxidoreductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43105	RESPIRATORY NITRATE REDUCTASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003954	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0008137	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016651	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0042773	Biological Process	ATP synthesis coupled electron transport	Interproscan
GO:0045272	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan
GO:0045333	Biological Process	cellular respiration	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03934	NDUFS1; NADH dehydrogenase (ubiquinone) Fe-S protein 1	EC:1.6.5.3 EC:1.6.99.3	Oxidative phosphorylation	ko00190	PMID: 28812709
			Retrograde endocannabinoid signaling	ko04723	PMID: 28812709
			Alzheimer's disease	ko05010	PMID: 28812709
			Parkinson's disease	ko05012	PMID: 28812709
			Huntington's disease	ko05016	PMID: 28812709
			Non-alcoholic fatty liver disease (NAFLD)	ko04932	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_9649-0.4 global RNA-seq network