Gene detail

Detailed information of Bpl_scaf_96-2.7 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_96-2.7	ENDONUCLEASE V	Bpl_scaf_96	255442	278138	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_96-2.7

TGCGATTTTCATGTTTACAAAAAATTACATCATTTAAAATTGTTATATATTAAGATGATTTTTTCATTTATCACTTCACAAAGTTAGATTAAGACACTGATATTGGTAAATACACAAAGATTTTATTACGAGCAGTTGCCACCTGAGAAATAATTATATGACAAAGAAGAATGCACAGACAACATGAGGGTGATGGTGAAGTTATGGGGAAATCTGCCATTTCATCTACAGAGAATGGACAGGAAACTGACTCACCAGTAATTCCACAGGAAATAAAAGATAGATGGGAAAGAGAACAGATAAAGTTAAAACAACAGATGATTCTGGAAGATTCTCCAGAAATTACAAAGTTGATTTCCTGTTGTAACCATGGTAACACTTCACTTGATTTTTTCATTGGTGGTGTTGACATTTCTTTCGTTAAGGGAGATAATGAGAATGCCTGTGCAGCGCTCGTTGTACTTAACTTTCCACAGCTTGAGATTGTTTATACAGACTGTGAAATGATCAAGTTAACAGCTCCATATATCCCAGGATTCCTAGCTTTTAGAGAAGCCTCTTTCCTGCTAGATATGTACGATAAGTTAAAGAAAACACATCCACAATTAATTCCTCAGGTTATTATGGTAGATGGAAACGGGCTTCTACATCCTAGAGAATTTGGTCTAGCGTGTCACCTGGGTGTTTTATTAGATACACCATGCATTGGTGTGGCAAAGAAACTTTTCCAAGTGGATGGGTTAGAAAACAATGAAGAACACCATTTAAAGATAGGAAAGTTAAAACAAGGTGGTGACACATTCCCATTAATAGGAACTACAGGGAAAATACTGGGAAAGGCTTTAAGAAGTTGTGACTCTACATCCAATCCTGTGTACATATCTACTGGTCATAGAGTCACCCTGAATTCAGCTGTAGAACTGGTACATAAATGTTGTAAACATAGGGTACCAGAACCAACTAGACAGGCTGATATAAAGAGTAGAGAATATCTGAGAGACAATTTCATATATGGACATGATGAACACAAAAATCAAGGACAGAAAAAACAAAAGACAAAAATAAAATATGTAGAAAAGGAAAAAGAAGAAACAAGGGATAAATGTAAACCTATTAACAATGTGGAAGAATTATTTGAAAGTTCTGGTTCTCTATTTGATGAGGACAATACTTAGAGGGGGTGTGCAAGGGATATAAACATAGAAAGGGAGGGCAAGGGGTATATACATAGAGGGGGTGTGCAAGGGGTATATACATAGAAAGAGAGGGCAAGGGGTATATACATAGAGGGGGTGTGCAAGGAGTATATACATAGAAAGAGAGGGCAAGGGGTATATACATAGAAAGAGAGGGCAAGGGGTATATACATAGAGGGGGTGTGCAAGGGGTATATACATAGAGGGGGTGTGCAAGGGGTATATACATAGAGGGGGTGTGCAAGGGGTATATACATAGAAAGAGAGGGCAAGGGGTATATACATAGAAAGAGAGGGCAAGGGGTATATACATAGAGGGGGTGTGGAAGGGGTATATACATAGAAAGGGAGGGCAAGGGGTAGATACATAGAAAGGGAGGGCAAGGGGTATATACATAGAGGGGTGTGCAAGGGGTATATACATAGAGGGGGTGTGCAAGGGGTATATACATAGAAAGGGAGGGCAAGGGGTAGATACATAGAAAGGGAGGGCAAGGGGTATATACATAGAAAGGGAGGGCAAGGGGTATATACATAGAGGGGAGGGCAAGGGGTATATACATAGAAAGGGAGGGCAAGGGGTATATACATAGAGGGGTGTGCAAGGGGTATATACATAGAAAGAGAGGGCAAGGGGTATATACATAGAAAGGGAGGGCAAGGGGTATATAAATAGAGGGTGTGTGCAAGGGGTATATACAGTCAATGGACATAAGTATTCGTGATTTTCAATATGGCGGCGTCCGACTGCAATACATGTTGATTACGTTTTTGGTCATTACATTAAAACGTCAGTTCGGATAATTATGATATTACTGTAAAAGGTAAGTGAAAACAAGACGTCTCGTGAGCCGTGACGTCATTTTACGTCTGTTGTGATTCCTTCCTGTAAATTGTACACAAACGAGATGGGTCGCAAACGCAAAGAATTGAGCACAGAAACCAAAGAATTGATCGTGAAGTTGCATAGGAAAAAGGAAAGGAGGTCGTATATTGCTGATTTATTGGACATACCCTGGTCAACAATTGACAGTGTTGTTAAAAAATATCGGTCAACTGGAACAGTAGAAAATCAACCACGAAAAGGGAGACGAAAATTGTTCACTGCCCGGAATGAAGTTGGGTTAAATCGTCTTGTGAAAAAAAATCGTCGGGCACCTTTGCAGGAAATAACCACCAAATTTAATGACAGTAAACAGCATTCGTTCAGCAGTAGAACTATCAGAAGGAAACTAGCATCTGAAGGTTGCAAACGACGAGCTGCAAAAAAGTGTGTCATTATTCGCGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04493	Endonuclease_5	Endonuclease V	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007581	Family	Endonuclease V	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28511	ENDONUCLEASE V	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0004519	Molecular Function	endonuclease activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0016891	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05982	E3.1.21.7, nfi; deoxyribonuclease V	EC:3.1.21.7	DNA repair and recombination proteins	ko03400	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_96-2.7 global RNA-seq network