| Gene ID | Annotation | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| Bpl_scaf_920-5.12 | DNA LIGASE | Bpl_scaf_920 | 578851 | 588153 | - |
| CDS | |||||
| Bpl_scaf_920-5.12 | |||||
| Transcript |
| Bpl_scaf_920-5.12 |
| Protein |
| Bpl_scaf_920-5.12 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01068 | DNA_ligase_A_M | ATP dependent DNA ligase domain | Domain | Interproscan |
| PF10283 | zf-CCHH | PBZ domain | Domain | Interproscan |
| PF14743 | DNA_ligase_OB_2 | DNA ligase OB-like domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012310 | Domain | DNA ligase, ATP-dependent, central | Interproscan |
| IPR012340 | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR016059 | Conserved_site | DNA ligase, ATP-dependent, conserved site | Interproscan |
| IPR019406 | Domain | Aprataxin and PNK-like factor, PBZ domain | Interproscan |
| IPR029319 | Domain | DNA ligase, OB-like domain | Interproscan |
| IPR050326 | Family | NAD-dependent DNA ligase B | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47810 | DNA LIGASE | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003909 | Molecular Function | DNA ligase activity | Interproscan |
| GO:0003910 | Molecular Function | DNA ligase (ATP) activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0006281 | Biological Process | DNA repair | Interproscan |
| GO:0006310 | Biological Process | DNA recombination | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10747 | LIG1; DNA ligase 1 | EC:6.5.1.1 EC:6.5.1.6 EC:6.5.1.7 | DNA replication | ko03030 | PMID: 28812709 |
| Base excision repair | ko03410 | PMID: 28812709 | |||
| Nucleotide excision repair | ko03420 | PMID: 28812709 | |||
| Mismatch repair | ko03430 | PMID: 28812709 |
| 1. Expression trend for Bpl_scaf_920-5.12 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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