Gene detail

Detailed information of Bpl_scaf_9026-3.58 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9026-3.58	WD REPEAT-CONTAINING PROTEIN 55	Bpl_scaf_9026	345680	367455	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_9026-3.58

GTTACCTCCCTTCTGTAAACAACCGCTCTATTTTGAAGTTTTAGAGCAAGAATAGACCTGACTTTTGACAATATTCAACAACATTTCGAATATTTTCAGTTTCGAAACAACATGACGAATGTTTTGGAGGATCCCTCTCTTGAGAGGCACTTCAAGGGACACAGGGACACAATCACAAGTGTTGACTTTAATCCAAATATGAAACAGTTAGCTTCTGGTTCCATGGATTCCTGTTTAATGGTATGGAATTTTAAACCAAACATGAGAGCATACAGATTTGTAGGCCACAAAGATGCTGTAATGGAAGTTAAATTTTCACCATCAGGACATTTGGTAGCTTCAGCATCTAGAGATAAAACGTGTAGATTATGGATACCTAGTGTAAAAGGAGAATCAACCGTGTTTAAAGCTCACACAGCTACAGTAAGGAGTATAGATTTCTCCAGTGATGGTCAGACATTACTAACAGCATCCGATGACAAAACAATAAAGTTATGGACATGCCACAGACAGAAATTTTTATTTTCTTTAAATCAACATATTAACTGGGTCAGATGTGCTAAATTTTCACCCGATGGAAGATTAATAGTATCAGGTAGTGATGATAAAACAGTCAAATTATGGGACAAGAACAGTAAAGAATGTATACACACATTTTATGAACATGGCGGATTTGTAAATCATGTAGAATTTCACCCAAGTGGGACATGTATAGCATCTGCTGGTACAGATAGCACTGTCAAAGTATGGGATATTAGGACAAATAAACTACTGCAGCATTATACAGCCCATACTGCAGCAGTTAATAGTTTAGCATTCCATGCCAGTGGCAACTATTTATTATCAGGATCTGATGATGCTACACTGAAAATTTATGACTTGTTAGAAGGAAGACTTTTCTACACATTACATGGTCATCAGGGACCTACTACCGCAGTTACTTTTGCTAAAGATGGTGCTTACTTTGCTTCTGGTGGATCTGATGAGCAGGTATTGGTATGGAAAACAAACTTTGATCAGTTAGATTTTGACGATGTGCTGAAATCTCACAAGGAAAGGTCAAAAAGTGGGCCACCTCCAAAAGTCAATGATATTCCACCACGAACTCAAAATAGAGCTCCCTCACCAACAAGGCTGGATTGTAGAGCAGAACTAAAAAATATGGAGGATGAACAACCACTGGTTACTGAAGTTGGACCAGCTTTATTTTCTTCTGGACAGTCATCTGCAGTGAATGGTGTTACCCATGAATTTGATATGACCTCTGCAGACCAAGCAGCCAGAAGTTTTGAAGCCTCTGCACGGACAAGGACATCTGAAACATCAAGATCTACAACCCAACAGCTAGAACCAAAATCAATACCTCCTCAACTAGCCAATACATTGGAACAGATTGTTGGACAACTAGATGTATTAACACAGACTGTTTCATTACTAGAGCAGAGATTGACGATGACTGAGAACAAATTACGTGAATGCTTGGACAATCAACAGAAAATTACTTTACAAATTCGTCCCACAGATTAGTTATGTTATGTCGTGGAGACATGTTCTACTGTCACATGAAATAAGATTTATGTGACATATACTGATCTATTTCTGTAATCTCAGCAAATTAAATGATCTTAAAGTTTAATAAGAATGCTAGTGGAATACTTCTAACTTAACTCTTTAATGAATCTCTACTGAATATATTGTAAAACGGACAACTACATTTATAAAGCATCTTTTTATAATAATTTTGCCCAATTTACTGTGTTCTTACTGTTCTACACATTGTTCTACTAAGTGTTAGGGTCTCAGTTGTCTGATTTAGGGGGGGGGGAGGAGATGAGAAGAAGATGTTTATACTGATATTTTAAGTTCCATTTCATAAACAAAGAAATTGAATGTAACATGCATCAAAGGTGTAGATGTAAGAACTTTTTATTTTTTTTATTACTTTTCCATATACAACTGCCAGATGTGATACCACAAATTATGACATTTAATTCACAATATACATCAGTTTCAATGGCTATGGTAAAAACTTATAGCATTTACTTCATTTGTTTGTTTGTTTATTAATTGTTAGTACATGTACCATCAGATCCTATGATTGTCATTAGTGCTATATATATATATACACACACACACACACAAATAACTCATTATAGACTCCGTCCAAAATATAAATACATAATGACGTTTGTTTACACGAAAAAAAAGTCAAATTGGTTGATATTATTTTTCAAGGACCATTAAACTATTTTGTTCTAAAATTTCAAGATAGATATCTGTGGAACATTTTCGTCAAATTGAAGAGGAAAAACATGATTAAGCAAGATAAAACAGGTTATCGATTCAATCAAGAATGTATCAATGACGTTAGTAAGGT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050505	Family	WD repeat-containing protein WDR55/POC1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44019	WD REPEAT-CONTAINING PROTEIN 55	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005814	Cellular Component	centriole	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16482	POC1; centriolar protein POC1	-	Chromosome and associated proteins	ko03036	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_9026-3.58 global RNA-seq network