Gene detail

Detailed information of Bpl_scaf_9002-0.26 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9002-0.26	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	Bpl_scaf_9002	26690	41730	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_9002-0.26

ATTTAATGTAAGAACCTATTTCTTACACAATGATGTTTGACTGTATTTAATGTAAGAACCTATTTCTTACACAATGATGTTTGACTGTATTTAATATAAGAACCTAAGTGTAAATTTCAACCAATCAAAAGCTTGGAAATTACACTTACGATTAATCTTAGACTTACGACTTTTTGTGAAATCGACCCTAAATATTATATTTTATTTTACTAATATTTCTACAATATAATTTTAACCAACAAAAAAAAAAAAAAAAAATAAATACCATTGTGGTATTCTTATCACTTAGTGTGACCCGTTTTTATCTACCCTTCATTGTCAGCTACCCATGTTTGATTATGCTCACTCTTCCACCATTATCATAATGGGAGAACAAGCATAATCAACCGCGAGTTACCACCAATGTATGCCATTGATGGCATTATGACAGGAATGTGTTTTCCATTTCTATTAAAGATTACTTATTAAAAAAGTATTTCCCCGACGTTTAACCGCTTCCAATTCTTCATTAATATAAGGTAAGAAAATAAGAAAAAGAAATATGATTAGATCATAATTAATAACCTTTTTCACCAGCACTTAATCCAGCATAAGGATTTTCTCTTGATAGATCTATTTCTTTTCCTGTTTTTGTCTTTGCATCTTTAGTGCTATAATTTCTACTTGTCATAAGCATACAATTATTTTGACATATTTTAATGCTGCTTGTCCTCGGGACTGTTTTACCATGAAAGACATTTCCATGTGAATTTAGTATTAGTCTCTGGAAACAGAATCTTAAACTGTGATCAGACCCAAATAAAATTCCTTTTTTAAGAAATATTGTTCTACTGAGTATAGTATAACTGTGCATTCTGTTTTTGTATTACCAGTTCATGTCAAAAATAAGAAATGTAAAAATATAGACATAAATGTTTGTTTTCGTGTATGGAAAGGCCAATGTCAAACAAGTGAAGTTCGAAAAGCTTCAAAATTTAGAGTTATCGGGGATCCCGAGTTATCGCCCTGTATATTTCGGGGTTATCTCCCATCGAAAGATATCCGGTCTGTAAACGAAACACAAAACATGAGTGAGAAAGTTAGCCGTTTCGAAGCATTAGAACAGCAACTTGAACTCTTTATAGAGACAACACGACAAGTAGGAATCATTGTCAGTGATGTTCAACCTAATGGACAGGCGGTTTTGAATAAAAAGTTAAATGAAATGATTACAGGAATGCAGGAGATAGATAAGATGAAGTCACAGATGGCAGATATCAATGTACCTCTAGAAGTTTTTGATTACATTGACCAAGGTAAAAATCCAAACCTGTATACTAAAGATTGTTTAGAGAAAACATTGGCAAAGAATGAACAAGTGAAGGGCAAGATTGATAACTTAAAGCGATTCAAAGCTTGCTTACTTGTAGAACTGACTAAAGTGTTACCAAATGAAATCAACACTTACAGAGCTCTTAGAGGTGATGACCCACCAACCTGAATATTGACCTTTCATAAACTATATTGAATTGTACATGCTTACTCAGGATTAGTGCATTTTGTTCTCATTTGATTAGATCATGGTGTAAGTGTACACAGATAGACAAGTTAATGGTCTTTGTTATGCCCACCCACCCACCCAAGAAAAGATATGATAGTATCATATTTGATAGAATTATTGTTTTTCATACTGGCGAGAATCTGTACTTAGCTAGAAACACTCGATGACCAATTGTATTCTTGAGGCATATGATTTTTTTTGTCCTTAAATTTTTACTGAATTTTATCATACTGTTGAAAGTCATGAAGTATAAATTATTTTGTTAATAATATATTTAAAGGGTTATTTTAGAAACAAACAAAAACAGCTCATGTATATAAATTATACACTCCTTTTATGAAAATATCTAGCATTTGTATACGACAGTCATGTGCTAAGATGACAGAGTAACAACATATTATCAATTAAAACAGGGGTGTGGAAATGCCATGCCCGACTTGCCCGACTCGTACACATAACCGAACGGACAAGTCAATTTTTATGTATTTGTTGACCGTGGACAAGTGAAAATTGGTCATGTTCTCTGGGGGGGGGAGGAGTCAAATTTCTTTTGATAATTGTCAAAAGATCATCAAATACGACATAACATAAATATGTAACTATGTCGGTTAAAAGTTTATGACTAAAAATAGATAAATTCGGTTGTTTCGAATCATTTCCATTCCGTCAAAATTTTGTTATTTTCGTCTGCCAGATCACGTGACTTCGATGGAACTGCTGGTCCTGAGCTTCCGGTGTCAATGTACACAACAAAAACTCCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09748	Med10	Transcription factor subunit Med10 of Mediator complex	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019145	Family	Mediator complex, subunit Med10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15151	MED10, NUT2; mediator of RNA polymerase II transcription subunit 10	-	Transcription machinery	ko03021	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_9002-0.26 global RNA-seq network