Gene detail

Detailed information of Bpl_scaf_9000-4.8 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_9000-4.8	NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN	Bpl_scaf_9000	407591	431612	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_9000-4.8

CAAATTCGGTTGTGTTGACCAAAACAATGACCGAAAGGAAAACGCTAAAAATCACTGCTGGAAATAGAAAATGAGATCATTCCTATAACAGGTACAAATCTAAGCATTCTTTACTTATGTATGAAGAGGAAAGAGGTAATAATTAATTGAAGAGATGGCTGAAAAATACAATAAAGAGTTGAACCAGAAGAATATAAGAGAAAAATTGAATGCTGAAAAAATAAAGTTGTGGTTACCACCTTACACATCTGAAAATGGAGAGAAAGGGGAAATTCCACAGGAGTTGATTCAGACATTTTGTGACGATTTGAAGCTTTCTAGTGATGCAGTTACTGAAGTATTAGAATCTTTACGACTTCATGCAGTACAGAAACTACAAGAAAGAAACAAGTTTCAAGAATCTGGACTAGCCACAATTAAAATAAAAATATCTGGACATAAGGAAAAGGAAGTAGATAATCCTGGTCCAACATCAATTGAGATATCTTTAGATTGTACAGGTCAGGTGTTTCGTAAAATGATAGGAGATAAGATCCAGACACCGCCAGAACAACTGAAGATCATTTGTTGTGGAAGAGTGATTGTTAATGACACAACATTAAAAGATCAGAATGTCAAGCATGGAACACAGGTTTTAGTGCTGTGTTTATCTGTATCAGAAGCAGAGGCAGCTAAGCAACAAGGGGAGATAACCAAGTTTATGTCTACAAAGAAAGCTGCGGAACTCTTGTCCACTAGAGCAGAAAATGATGATGATGGTGATTTTGATATACAGATAGCAGATCAATCAGGAAGACCTTTACAGTTACCATCAGAGGAAAAAAGGGCACTGACGTTAGCTATGACATTACACGAAAAGGGAAGAGTTGCTCTAAAGAGAAAGGAGATTGAACAATCACTACTGTTACTGCTAGAAGCTGATAAAGAATTCAGTAAATGTAGAGCTGACATATTGAATGCTGTAGACAACTATGCAGTGTTATGCCTAGATATTGTATGGTGTTATCTTTGTCTGAAGAATGTAGAAGATTTACCTGACGCAGAGAAGAGACTGAACATGAGTGAAGACTGTTTTATAAGAAGTTATGGTTCAAACTTCGAAAGAGTCAATGCAGTTAAAGGTGGATCAGGGACAGAGTTGGCTTTGTTTATGAAGCTACATTTGCTGCAGGGAATTGTTGCCTTTCATCAACACAGAGTACAAGACGCCAAGCGACTCCTATCTAGAGCTGAGTTTGAATTACAGCATTTGATAGTTGATGAAGAGAAATTGACTCAAGTTATGACAATGGGTTTTAACCAAAGAGAGGCTCGTCTGGGACTGAGAGCATCGGCTGGAAATATTGACCAAGCTGTTCAACATATCATGCAAAGAAAAGAGGAGAAAAAAGAAATATCAAAAAAAGTGAAAGAAGAAAGAAGAAANATGATAAAAGTGAAATATCGTTTAAAGTACATTAATCATTGCATATTCAGAGTCAATGTAAACAGTTACGAGATGCTAATTAACATGGGTTTTGGACGAGGTGCATCAGCCGAGGCCCTTAGACAGGCTAACAATGATGTTAGTCAAGCCTTAGAGGTTCTAGAAAAACACCCAGAATTCCTGTCTTTACCTGATCCAGAACAGAAGGAAGTAACAATTACAGATGAAATGTTAGCACAGGTGTTTAGTCTAGGCTTTGACCCAGAAATGGCAATGAAAGCTCTGAAAAACTGTGCTGGAAGTATTCAAAAGGCCATCGATGAATTAATAAGGAATGGTGGAATTATATCTACCAGTTCTGAAAGTAGTTCTGCAGGCAGCACAGAATCATCATCAGATAGTTCACCAGAAGCAGGTCCTTCTAATGTTAATGATGACCAAAAACAAAAAAAGAAAGAAGAAAAGGCAGTTTTACAAGATTTGTTATCTGATTTACCAGAAGATGAAGAAGATTATTTAGATCTGACACTGACAGAAGAAACAGAATTCCTAAAGGAGTACAAGGCTTTGGTTGATAGTGTGGGGTATTAACAGACAGAAATACACACCCTGTCAAGATAAAGAGGGAAATACACATAAACAGAAATATACACCCTCTCAAAATAAAGAGGGAAATACACATAAACAGAAATATACACCCTGTAAAAATAAAGAGGG

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UBA
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627	UBA	UBA/TS-N domain	Domain	Interproscan
PF18037	Ubiquitin_5	Ubiquitin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR015940	Domain	Ubiquitin-associated domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR033864	Domain	Deubiquitinating enzyme 14, UBA domain	Interproscan
IPR039749	Family	NEDD8 ultimate buster 1	Interproscan
IPR041207	Domain	NEDD8 ultimate buster 1, ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12948	NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:2000058	Biological Process	regulation of ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_9000-4.8 global RNA-seq network