Gene detail

Detailed information of Bpl_scaf_866-4.12 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_866-4.12	METHIONYL-TRNA FORMYLTRANSFERASE	Bpl_scaf_866	466310	490447	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Bpl_scaf_866-4.12

CCTATACTATAATCCCCTGGAAAGACGGGAATCACGACTGGCACGAAAGTCAAAATAAGTTATTGAGGCAAAATATCATATTTTTACTCTAAGAAAATCAGAGTCGTTTTAACTTGCGCGACAGTCATTAGTCGTCCACAGCCTGACACACTGACAGACACTTACTTAGTAGTAGAGAGCCGGGTTTCACTCTTCAGAATGCATTCCATTCTTTTTTAGTTCAAACATTGAGTAAAGACAACTGAAAGCAGTTACACATACCGATAATACAACAACAAAATCTCTTTGGAAATAAAAGCAAAGATTTCCTCAGATCTGCTACAATAAATGAGTTTTCTTTTTTCATCTGTTTAAATTTAAACATACAAAATGCATAAAGTAGAAAAGATACTGAAACCAGCAACTTATTGTAGATATAGAGCAAGAAAACTAAAAATTTTACGATTGAAATCAAATTTAACGCAGAATGATATTCCGTTCCCATGGTTACAATCAACAGATTTTTTTCACCGAATGAATTTCTTGTCAGTACCGTGGTACAAAAATAAAGAGAACTTTCACAATTATGATGCATACTGGTACTATTTAAGTGACAAGACTATACAAAGAAGAAGTGATCCATTTAGAACATGCTTTCAGAGGAGACATTGTAGCCGTTGTACATTCATTGATGGGAAAATCCCAGAGGGCTTCCGATCAGCCCCGCCATGGAGAGTGCTGTTTTTTGGAACAGACCAGTTTGCTGTTTTTACATTGAAACTTTTAAATGAAAACAGATTGATGAAGACAAATAGTGTTGTTGAGAATTTAGAAGTTGTTTCAAATCAGGCAAAGACACCTGTTAGGACCTATGCAAATGAAGCTGGTTTGGTCGTCCATGATTGGCCTGTAGCACCATCACATGACAGATATGATGTTGGCGTATTAGTATCATTTGGTCATCTGATCTCAGAAAAGACTATTCATCAATTCCCATATGGAATATTAAATGTCCACCCGAGTCTGTTGCCCCGGTGGAGAGGAGCATCACCTATAATACACACAGTTCTAAATGGAGACACAGAAACAGGAATATCTATTATGGAGTTACGACCTAAACATTTTGATATTGGTCCATTGTTGGTACAGAAGAGAATTCCAGTTCCACCCAATTGTACTTCATTACAGTTACATGACATGCTGGGTCCTACCGGAGCAAAAACGTTGATACAGACACTTTATGATCTACCAACTTTAGAGAGATTTGAAGTTCCTCAACTAGACAAAGGTGTCACCTATGCACATAAGTTATATCCAAATATGGCATATATAGACTGGGAAAATCAGACAGTTGACAGTATCAGTAGACAATACAGAGCTATGCATGAAGTGATTCCATTGAGAAGTCAGTTTGGTCAGTACCCTATAAAGCTGAAGGAAATGGTACTCAATACAGACACATTAGATAAGAAAACAATAGATAGTCGAGGACTTTCACAGAGATACATACCCCCTGGGACACCTATCTATAGTAAATATAATAAAATCTGCTGGATCAAATGTAAGGATGGCTGGGCAGGATTTAGGAAGATCACTTTGAGGAAGTCTATGTCAGCAGAGGCATTTTATAATGGATATTTACAACAAACTTGGCATAAAGATACATTATTTACTAGTCATAGAAACCATTTGATGGAAAATGTACTTCGAGAGAAAATTATTGCTTTTGCATAAAATGATTTTTAATATTAACGTGTTATGCTATCTCTTTCCTAGAATTAATTGCATCAGCAGAGCTTTCAGTATTTTTCAAATGTACCAGTACACCACTATTTACAGGCGGTACTTTTTATTCAAATTTAAATAATTTTCATGGATATCTTACACAACAGGTATAAATCAGGAGGTGCCAAAGACCATTTTAGGCAGGTAAAAGTACCTCGTACCTACCCTTATTGAAAGGTATGCATCGGTGGTGTAATGGTTAGCATACTCGCCTTGAGTGTGGTAGAATGTGGGTTATAACATGGTCAGGTCAAACCAAAGACTATAGAATGTGGTATTTGCTCCTTCTCTGCTAATTATGCATCATTTATATAGGAGTAACGGTAATGAATGGTGTTGACTGGAAATCAGGATAATGTGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00551	Formyl_trans_N	Formyl transferase	Domain	Interproscan
PF02911	Formyl_trans_C	Formyl transferase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002376	Domain	Formyl transferase, N-terminal	Interproscan
IPR005793	Domain	Formyl transferase, C-terminal	Interproscan
IPR036477	Homologous_superfamily	Formyl transferase, N-terminal domain superfamily	Interproscan
IPR041711	Domain	Methionyl-tRNA formyltransferase, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11138	METHIONYL-TRNA FORMYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004479	Molecular Function	methionyl-tRNA formyltransferase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0071951	Biological Process	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00604	MTFMT, fmt; methionyl-tRNA formyltransferase	EC:2.1.2.9	One carbon pool by folate	ko00670	PMID: 28812709
K00604	MTFMT, fmt; methionyl-tRNA formyltransferase	EC:2.1.2.9	Aminoacyl-tRNA biosynthesis	ko00970	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_866-4.12 global RNA-seq network