Gene detail

Detailed information of Bpl_scaf_7841-0.1 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_7841-0.1	HEDGEHOG	Bpl_scaf_7841	39757	62169	+

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_7841-0.1

ATGGTATTCTTAATTTTCCTTTTGTCTATTCTTCCAATAACGGATGGTGTACCTTTTAGTCATAATGTTGACTTTGAACACCCGGAGAGTGGTGAACGGGTAAAACTTCAGAGTACTGGACAGTTAACTAATGCTGTGGACCTTGACAGAATTGAGGGTATTAAGAGGGTCATTTGTGAAGAATCCAAAGTACTGATTGCTGCCAAAACAAACACAATAGCTAAAGAGTGGAAAGTAGGTCAGGTCATACTCGGATCTTCAAAGTGGGATTGCCATAGAAACACGTTAGGATCTACGACAAAAGGCATATACGCCAAAATCAAGGCTGTTTACTTCCCTACTGAGACTGGCATTGTAGTACATACAGATAAAGCAGGTGCCTTTGACGTAATCGATGAAGCCGACATTAAATTTCACTACCACCCGGGAAACGAAAGTAGACATCCACCAGAAGTTAGACGTCGACATCGTCGATACCTCGCTAATGTGTTGTCGGAGCTTTTACACGACATCGACTGGAAAGCAAACTTCAGCACGACTGTTCCATGGAATTATGATTTAGATTCCAAGTCGAATGGACCTTCTTTTAAAGTTCGTACACTGGAAACGGATAATGAATATGACGTTGAATTTGGAGATCAAAATACCACCGATGAAGAAGTATTCGCTTTCAAATTTCAAGAATATTCGGGTGGTAAGGATATGCAAGGTTACGTCAATGCTGATAATTGGGTCGTTCGTGGAGACAACACTAAAACAAATACAACCAAGGACCTTCAGCTTTATACATCTGTCTTTCAGAAGATAAATCTTACAACAACAATTGGATGGATGGCCCGAGACATGGAAATAGATTTTTCTCCTCCTGTTGAGTTCCGAATTGTGCCAACAGTAAAATCTATTTCATCACCAAATGACGTCACAAGATGTAATGTTGATACTTTAGAGATAGAAGGAGATTTCAACGTGTCCGACGCTCGACTTATAGTTGATGCATTTGATGTTCCAATATGGAATACTTTACTAGCGGAAGGATTTAACAGATCAATTAAAATAAAAGAAGAAGAAATGTTAAGATCATGTCGAGCTGACTGCTTTCCCATCATGTCACCAAATGTCAATGATGTGATGGCAGAGGAAATAGTAGGGGGAATGAAGAATCGTATTTCACGAAATGATACATCATTCAGCAAATTACGTCAATTAATCGGTAACAGCATACTCTTCGCGTCAGAGGAAGCTACTACTGCCACCTGGTGTGGGTATCCAGGACGACCATGTATCAGATGTACAGACAAGATAGCTGGACATGATGACGCTCTAAAATGTGCTGATAGAATGATGACGTCATCATTAGCATCTACTACGAGTCTGCTGGGGAAATACGTCACCGCTGAATGGCCAGACAGAAAGTTGGTTGTTCATGAAGCCTGGGACGAGCCAACATCAGTGAATCCACAAGGGGAACATGGGAATGTATCTCTTCATTACGAAGGCAGGGCTGCCACCTTATCCGTTTCGTCCAAAATAAATGAATCCAGCTATCTTTCTGACAATAACCCATCATTATCAAAGCGGTTAGAAAGTCTTGCTGTGTGCTCTGGCTTTCCCTATGTTTCTGTGGAAAAGGATAGGAATCTCGTACATGTTGCAGTTAAAGAGGAAGAAGTCATCCATATGAAAAGAAAGACAGTTCAACTTGTAAACTCAAAGGATAAACAAGCTTTATACGAATATTCTGATATTGGTGTTCAATTTGAGAATGAAGGACCAGTCGATAAAGAATGTGGACTTGGTAGGGCATGTAAAAATTGTGATAGACCAAGCATGAGTGGCTCTACATGGGACTGGTGTTCTACACGAACAATGACCCCGAGACTAGGTCTCAGGTTAAAACGTCTGGCAGTCCTAGTGAGAAAAGATAAACTTTTAAAAGATGGTACAATAAAAGTCTTAAAAGCTTTCAGTGATACAACACCTGACGGAGTGTCTCCGTTGTTCAAAACAGGAAGGGCTATAAGATTTACGTACATACAAAATAATACGGAAGGGAATTTAGAGCAGATGAATCGACTTGCTTCATTATCAGTATGCGCAGGATTTGATTTTGTCAAGTATCTTTCAACTGCCTCAATAGAGGTTTTCGTTAAAGAACAATCAGGTTATCGTACTTCACTTAATGCTTACCCCAGTGGTGAGGTCTTGATCTCTGTAGCCCCACCTTTAGATCATCCACATGAATATTCATTTCCCGACACCCTTGAAAATGAAAGTAGAAAACCTGCCTTAGTAAGACCGTTAGACGATCACATGAAACTATCCAAACATTTTACTACTGGCGACTTTAAGGATAAATCTACATCGTATATGAGGGTAGACTCAACATTGGTTGAATGCTTAGAAATGACAAAGCAATCGTTTAAGCAAGGCATATACATTTTGAAAGCTTACACTACGAAATCGACAAACAATGAAATGAACAGCGAGTGGAATCAAGTACAACTCGACCGGTTTCAAATGGGACAAGCTGCTGTTATTCAGGACGAGGAACAGAGTACAAAAAGTGCAATGGAACTGGCAAAGCTATTGATGAGTATATGTACACCGGTACTTCGTTTACAGAGGCGTGGATTGTCTATATCTATAAGAGACAGTGGAATATGTGGACCTCAGATAATACCATACAACCTGGAGAAAGCATGTAAGCCACCTGAACTTGGAGAGAAAAATGCCCATTTGTCATTTAAGCTTAATCATATTGGATTCTGTTTAAATTTCCTGAAGACAAAACAATGCGATCAGAGTACAGAGGCAAGACATTTGGAAGCTGAAAAGTTATGGAAACAATTGTCTTCAACTGTTAGTAGAGGCACACTTCCACCAACTGAAATGCAAAATTATATTTCTGAATGTCTGTATGATGTATGCGGAGGTTGTCCCGGGGCAGGTGTTAGCAAAGATAAGCTAGCATCGGCCATACAGCGGAAGATTGAGACGTGGGCCGGAAGTGCTTGTCCAAGATGGAGTCGGTTTGCAGTAGTACCTTACAGTGTAGAAATGGTACCTCCCATACGTGAAGCTCGAAGTATTGAAGATGGCAGACATCGAAACAAAATGAAAGAAAAACAACGTAACTGGGAGATAGATTGGATAATGATGACTTGA

Transcript

Bpl_scaf_7841-0.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01085	HH_signal	Hedgehog amino-terminal signalling domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000320	Domain	Hedgehog, N-terminal signalling domain	Interproscan
IPR009045	Homologous_superfamily	Hedgehog signalling/DD-peptidase zinc-binding domain superfamily	Interproscan
IPR050387	Family	Hedgehog Signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11889	HEDGEHOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0005113	Molecular Function	patched binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0007224	Biological Process	smoothened signaling pathway	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_7841-0.1 global RNA-seq network