Gene detail

Detailed information of Bpl_scaf_7524-4.15 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_7524-4.15	ZINC FINGER PROTEIN 294	Bpl_scaf_7524	408101	446869	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_7524-4.15

TATTTTCAGCCATCTAGTAGTAGTCAAGCTGCTCAACTGTTAGTAACAACAGGTACTGCCTCTACTGGTTTTTCAGGATTTGGAGGGTTTTCTGGTAGTCCTGGATATGTACCTGCCAGTCAAGTTTTTGATGATGTTGATAGTACTCTTGATGCTGATTTCAGAATGGTACTTAGAAAATTGACAAAGAAGGACAGTACAACAAAAGTGAAGGCATTGCAAGAATTTAGCAGTCTTTGTGAAGATAAAGACATAGAAGACTTGAAGGCTGTTTTACCATTCTGGCCCAGAATTTACAACAGAGTAGCACTTGATGTGGACCATAAAGTCAGAGAATGCACACAGTTGGCTATGACTACATTAGTCATTAGAGTCAGGAAGAACTTGGCCCCATACCTAAAGAATCTGATGGGCAGTTGGTTACTTTGTCAATGTGACACATACCCCACAGTATCTACTGCTGCACAGCAAGCCTTTCAGACAGCTTTCCCTCCAGCCAAACAAACAGATGCTCTTGTATTCTGTAAATCTGTTGTTAATGAGTATCTGATGGACAATCTGTTGAACCAGACACCCAATACACTTAGTGATGCTTTAATAACCGAACAAGATGAAATGATCAGTAAATACAACAGGGTGATAACCTCTTCCTTATTGGCTCTTAGAAAGCTCATCACAACTCTTCCAGCCAATCAGATTGAGGATCTCAAAGAACCATTGAAGACATTACTAAAAGATGGAAAGTTCTGGAAACATGGAAAAACAACGATAACCTCGATTAAAGCAGCTATGTACACATTCCTGGCAGGACTTTGTCAAACCATTCCTGATGTCGCACAAGAATTCTCAAAGAAGATTTCTCCATTTATTCTGAACAACATCGATGAAAGAGACCCTGTGATCTGTTCTGCTGTTTGGGAATCAGTTCTCTCCCTTGTAAATTTTGTTACGGAATGTTGGTCTGACGTTAGTGTAGAAAAGTCATTGTGGCCGAAGTTACGGAATATGTTAGAAAATGGTTGCTATGGAAATTGTTCATTAATTGCTCCAGATTTACTTCCCTTTATAAGTAAAGTTCCACCTGATTTGCTTAAAGAAGAAAACAAATTTTACTTGGAATTCCTGAGCCATATGAAACTTGGACTGTCTAAAGAACAGGTACAGTCCAGCACCACTGAATGTAATGCTTTCGTCAGAGCTTTTATAGAGTGTGTACAATTTGTGATGAAAGAAATAACCACAGCCAAAGGTGATATCACAGCACTGAAGATAATTCTACAAGATCAGCTCTTGCCAGTAATGATATCATCAATGGTAGAAACTAATACTGCCTTATACAACTCTCCTCTGTATGGTATGATGGGAAGTGCCGTAGGAAAATTTGAAAAGATGGACAGTGATAATGTCACATCAGCTGTGCTCTGTTATTGGTCAGAATTATCAGACAAAGTCAAAGAGAGGCTGAGTATGGAAGCTGAAGATGAAAGCATGGTCATTGTTGAAAGAGTGATATTTCTAGTGAAATGTTTGATATTCCCAAAAACAACAGCCAAAATCAAGACAGACAAAGTTAGATTTCAAAAGGAAATGACTGTTGAGGACACTTCTCAAAATAAACAGGAAAGAGTTGAATTAACCAATGGCATGGCTTTATTTGTACAAAAGTTAACAATCCATGCATTTCAGAGTGCTCATAAACAATGGAACCCTCCAAATTTACATCTGTTTGCTGCACTGGTAGAATTGGAACCCTCTGACGACACCATCAGACTTGTGATAGAGTGTTGTCATGGTGATTTTTCAAGTGATCAGAGTCATTCAAACTATTTTGTATTTAATGTGTGTTTACCATGGTTACATCATGCACAGAGTGAAGAACAGTCAACAGATCTAAAACAATTGATCAGTGTCATATGTGCGTTTATAGCATTGTTAGATAACAGTTCACTTGGAGCACTGCTAGAGACCCTCACAGAAACCGTTGAGAATTTTGAAGCTTTCTATCATCTTTTAACAAAATGTGTCAAACTCCAAGTAACGTTTAGCAGTATTAAACAATGGCTACATAGTGATACACTTGGGAAAAAACTGGTTGACATAGCAACAGTCGTCTGCAACGAGAGCACAAAGTTAACACCTGCTAATGGAGCTACTATCCAGTATGGGTGGGATATTATTTCTCTTGTGCTTACTGCAGACCAGAATTCAGTTCAAGTTATCAGAGAGGAACACATTAAGCAGATATTACAGACTGTACATGGTACATTACTGTCATTGGCAGATAACTCTGACCCTAACAATGCAGATGTCGCTGTCAGCTTTGTTTCCAAGGCAACACAGAGCTTCTTTCTCAGTTCTAGGATTTGTTTATTGTTACCGTCTGCAGAAGATCTATTAATAACTCTGTTTACAATATCGCTCTATAATACATATAGAGTTACAGATGATACATTAAAAGAGTCAGAGCTTGTGTGGACAACAGGTATAGGGTCTATTATTAGACATACTGGTGGATTGTTTAAAGATGGTGGATTACTACAGAAAATGGTGGACGTCATCAAAGATAATGTGATGAAAGTTGAGCAGTTTGATATATTTGAGAGAATGATAGCAACAGTAAATAGACTGTTGACTGTTGTCAAGGAGAATTTACCACAGGACATGGGAGATAACCCAGTGTTGACAAATCTGATAAACAATCTATATATCACTGCAGACAATGCTGTACCAAAAAAGGTCTTACAGTACTTTGTGATGAAAGGTCAACTAACATATCTAAATATGAAACCAAGTACAGCATCTGAGTTTAGCTTCACACAAACTCTGTTTTCTGCCTTGTATAATGTTAAACTTCTGTGTTTGTTTAAACTGAAACCAACTGGACCGGGAACCAGAACACTGGAACTGGATTCTGAGGAGATTAAACTGTTACTATCTGTGTTACACAGTATGAATGTTGTAAACCAGTGGAAGGATATGAACAGTAGTGTATGTAAATATCAAACATTAACACAATCAGTTGATAAACTGTCGTCTGCTGTTTCTTCATTAGTCCAACAGTTAACTGAAAATGGTAGAAAGTACCTAATGACAGCAGCTTTAGACAGTGCTGCAGAGAAAGGATCATTATGGTGTGAAGCCTTGCATTCTTTGCTGTCTCTGTATAGTAAAGATATGTCATTTACACTAGACTTCAACGCTTTACTAGATAGGTGTAGCGAGTTAGATGAGAGTAGAGTGCAGGTCCTACAGGTGGCAGCACAGTATCTGACCGTAGATAATAAACAAACACTTGGTGAAATAATGGTGGCTAGGATGATGAGTGCTGAACCAATCTTTCCAGTCAATGGTGGGATTCAAGCTTTGTCTGTTTTGAATTCTGTTGTCATGGAGATTGGTGATCTGGAAAATTGCATAGAATTAATGGAAGCTGCTTTGTCCCAGATATTAACCTGGAAGGAAGATAATGATGATTTACTATTATATTCTTGTGATGTAAGTCAATCAAGGTCAGAGATAGTATTTGCAAACATTGAAATGATGAAGTTTCTGAAGCAAGCTGTCAGCCTCATTCCCAGAAATCTAACAGAGAAAGATTGGGACTTTGTTATGTGTAGTGTTGTCTCTCTTGTACAGAGTATTGAAGAGAGTGTAGATAAGTTAAAAGACTCTACAGAGATACAGGTATTTACATGTAATGTCTGTCGTCTGCTAGCGAGTGTAGCAGACTGTATACAGACAGACGTAGAATCTGGTCAGTCATCATTTCCAGACAACTTAGTTACAGAATGGAATGAATTCTTTAGTGAAGGAATATATGGTGTTCTTCTGCCACTATTCTTGAAAATAGCAGTTGAGCATAATAAATCAGTGTCGGGCCAGATATATCAGTTACTGAATGCTTTATCTCTGTCTGTATGCCAGTGTCCTAAGCAACAAGTGATAGACCACAAACTACCAGCTTACCTTAAGACTGATGATACAAGTGGTTTACCTAATTCATTGCAGACTTTACTAAATCATGTGTGTCCACTGTTAAATCATGATGTCAGAGAGGTTCAGTTAGCAGCATTCCATCTTCTATACAGTATAATGTCTGAGTTGCCTCAGTATGAAAAAGAAAGTGAAGAATCAGAGGAAGAGGAAGTATCAAGATGTCCACCTCAGCAGTTGATGGATATATTGTTAGAATGTACAGCAGTAGACGATCTTCTTTCCAGCCTCAGTCTGGAGAATTATCTCAAAGTTCACCCACGTACTGATGAATACACAATTACATTGTCCTATTTATTGACCTGGAGATTACTTCTCTACTTTTTCAAATGTTCAACTTCCGAGATAAGACAAGAATATGCCATATACTTCAGACAGACTGGTATGGTACATCATCTTTTATCAAACATCTACCGTTTAATGCCTGATAATCCAACACAAGAAACGAAAATCATGTTTGAGAAAAATTTTAGCTTAAATGTTGGCGATAAAGTCAGTAGTAAAGATATCCAGTATTTAGCCTGTAGTGTATACAGACACGCCTTACAGACGGTTCCTGCTATAGTTAGACAATGGTGGAAAGAACAAGATAGGAAAACATTAAATTATATTGACAGATTTACCAGTAGGCATGCGAGTCCATCGCTGTGTACAGAAGAAATACAACCAGTTAGTAAAACAGAAATACAGCTAGATAATATTACAATAAAAACCAGGCCTATAACAAGGGAGGTAATTGTTACATATGCTTTAAATGAGGTTACCATAGAGATGGTAATAGCTTTACCAGAGAACTATCCTCTTGGTACAATCACAGTTGTCAGTGAGAAGAGAGTGGGCGTGTCAGCTGCAACGTGGGATAAATGGCTACTACAACTCAATGTTTTCTTACAGTATCAAAATGGAAGTATTATAGATGGACTGAGAATATGGAAGAAGAATATAGATAAAAGATTTGAAGGAGTTGAGGATTATTATTATGCTGTTTGA

Transcript

Bpl_scaf_7524-4.15

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR039795	Family	E3 ubiquitin-protein ligase listerin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12389	ZINC FINGER PROTEIN 294	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0043023	Molecular Function	ribosomal large subunit binding	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0072344	Biological Process	rescue of stalled ribosome	Interproscan
GO:1990112	Cellular Component	RQC complex	Interproscan
GO:1990116	Biological Process	ribosome-associated ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for Bpl_scaf_7524-4.15 global RNA-seq network