Gene detail

Detailed information of Bpl_scaf_7318-4.34 in Gigantidas platifrons Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
Bpl_scaf_7318-4.34	REELIN	Bpl_scaf_7318	304834	387897	-

Gene Structure

More details in Jbrowse Sequence

CDS

Bpl_scaf_7318-4.34

ATGGACAGATGTGGATCTACATTAGCTTTGGTGGACAATGAACAAGTGGAATCTGATGGTTATTCCTCTGGATATGAATCCACACCAGAACAATCAGACTCTGAATCCACCACACCAAACCTGAATCCAGCCAGCTTCATCAACAGGGAATCAGTCAAGATCAAAGAAAAAATGAGTTACAGAAATACACAAGCTCTGGCAGAAAATTTGAAAACAATCTCCTCAATTCCAGAACTTTGTGACGTCATGTTTGAAGTTGGTTCAGAAAAGGTGAAAGTTTATGGAGTCAAGGCCATTCTTGGGACAAGAAGCAGAGTATTATTCAACCTCATTCTGAAGAAGCAAAAAGAAGCAGAATTTTTTACTAAAGCTGAGAAAAAAGACAAGAAAAAGAAGAAGAATGTGACTTCATCAGAAAAAGTAACCATTGTTGTAAAGAAGTATGAACCGGAGGATTTCAGAAAGATTGTACAATTTATACACAGTGGTTCTGTGGATATCAACAGTTCATGTATAGCTGGAATTTTATGTGGTGCATCACAATTTGGCCTTGATGACCTTGAAAGAGCATGCTGGGACTTTGTTAACCATAGTATAAATTGGACAAGAATGACCTTGACATTACCCTATGTTGCTATGACACCACATGTCAGATTTAGATGGAAGCAGACCAATAACAGAGAACCAAACTGGGCTTTAGATAATGGTTTATGTGATTTTGGTTTCACTGGATCAACCTGTAACTCTAAAGCTGTGTTTAATCCTATGTTGTTGATGGAAAACTTTGAAGACGACCATATCTTAATTTCCTCTAGTTTAATAACAGTCAAAGGAGCTACTATTAGTTATATATCAGAAATGGTGTTGCTACCTAGAGATGCTAAGAAATCATCATGTCGATTCCGTTGGTGGCAACCATATCACTCTGGTCAAGGTCATGATATTTGGGCAGTAGATAGCATTAGTATAAATCACCACTTATTTAACACACTGGATGTAGAATTAGAGGATGGTAGTAATGATACACAACACCTTATTGTAAATAAAGGGCAGATAACTGATGGATACTGTGATGGCAGAAGAAGTGTCAATTTCTATGAAGAAAGACAGGATGATGACATCAGATTCCTGATGACTGAACCCCTACATGTTGGTCCATCGTACATCATACAGTTTGAACTAGTTATGGGATGTCATCTGATGTATGATATGACAAAAGACAATCACATACTGCTAGAATATTCTGGAGATCATGGCCTTAGCTGGTCCTTAGTCATAAATCCATGTCTGCCTCCCACATCATGCGAGGAATATAATAAGGGAACAATATATGATCCATCTCAGTATACTAAATGGAGACCAGTAACAGTTCCACTGCCTTCTTCTACATGGGGACCAATGACCAAGTTTCGATTGCGCCAGTCGGACTGGGGACCAACTGATTCATGGGGTGTTTCAAGGCTTTACATTGGTCAGGAATGTTCTGGTATGTGTGGAGGACATGGCAAGTGTATAGAAGGAGTTTGTCACTGTGACCAAGGTTACGTTGGAGATGATTGTAATCCTACGTCACCGATGGATACGACTATGCAGGCTGACTTTGGTATCAGATATCAACCTGACGTAGACTTCTTACATATCTGGGGAGGAGAGGTCACTAATGGAGATAAAGGCTGTGGTACTTTGTTTTCTGGAGAAACTTTATATTTCTCGGGGGCAGGAGCAAGAGAGATCCAGACAAAAGCTTTTAATACTCTGACAGCTGATTATATTGAGTTTTACCTGAGAATTGGAGGTAATTTACCTGACTGTAATGGTGCTGAGAAACGTGAAGAAGGTGATCATGAAGACCCTGTTAATTCTGGTAAATGGCTGACGATTACAGAAGGAGTTAGAGGGAAGTACTGTCAAGCTAAAGACTATACACTTATACTGGCAAATCAACAGAATGACAAATCTGTTGTTACTAAAGATCTCCAACTACAGCAAGGGGATGTTATACAGTTTAGAATTAATGTTGGATGTAGTACCCATTTTAGACTGGACCATCCAGTCATGTTACAGTACAGCCATGATGGAGGACAGAACTGGAGACTAGTACATGAACCATGTTATCAAGAATCAGAGTGTAATGGACTACATACAGAAGGCACTATTTATTATTCTGGTCCACATGGTCAAACGTGTGCTGATACAACAGTCAAACCATATGGTCTGTTTGATTGGTTTGACAATCATCATGATCCCTCAGATGGTTGGAAACGTATACTAGGTGGAAGTCTAGGTTTAAAGTGTGGTGTGGTGGATTATGGGAATGCATTGTACTTTAGCGAGGAAGGAACCAGGGAAGCAGTTACTAGACCACTGAATACAACATATTTAAGAATGGTACAGTTTGTGATAAAGATTGGAGGGAATGATGGTTCCTTCACTTGTTCAGATCCCGTTAACAGAAACGAAGGTATTATCGTAGATTATTCCACAGACAATGAGATTACATGGACAGTCCTAAAGATGGTGGAACCTAAGATTTATAACACCACTAAAGAGTTTGTTACGTTAGAGTTACCAACAGACGCTAAAACAAATCATACTATATTTAGATGGTGGCAGCCATTAGGATATGGAGGTTTAAGATTTGCATCCACACAAGACTACCATGTGACACAGTCAACCTTTCTACAGTTTGACATAGCTATGGGGTGTGATTCACTCTACGACAGCCTGTATGGAGTGATGTTAGAATACTCTATAGACATGGGACAAACCTGGAGACCTGTTATAGAGGAATGTGCACCACCAAATTCACCAGCTACAAGATTTAGATGGAAACAAGTGAGTTCTATTCCTAGAGGAAATGTATGGGCCCTAGATAATGTATATCTGGGTACAGGATGTCCATGGTTATGTTCAGGGCATGGCTACTGTAGGGAAGGAACATGCATCTGTGACCCAGGTTTTACTGGCCCAGCCTGTATTCCTTCACAACCCTTACCTGACATATTAAGAGATGATTTTAACACTGACACTCCAAGGAAAGATAACTGGTTAGAATTATATGGTGGAGGTAATTCTAAACAATGTGGAACTGTCGTTAGTGGGAATGCCATGACATTTAATGAGGACAACATGAGACTGGCCGTGAGTAAAGACATTGACTCCAGTATGTTAGAAGCTATAGAGTTCTACTTTAAATATGGATGTAATGGGAACAAAGGCTTCTGGCCAAGATCAGAAAGTGTGCTACTTCAGTACTCTATAAATGGTGGAATAACATGGAATCTGCTGAAGGAAATAAACTACAGAAATCAGTCGGATCCAAAATTCTTTAGTTTAGATTTACCAATGAAAGCAAAGACACATGCCACTAGATTTAGATTTTGGCAACCAAGAAATGGAGTAGTTAGAAAAGTACAATCTATTTTAGGTAGAATGGCATCAGCCTGGGCAGTAGACAATCTGTACATAGGGAAAATGGCAATGAATCCAATGTCAATGACTGATAATTTTGATGACAAATCTCTGTCAAATGATTGGTTATTTATCAATGATGGTAGAGTTGGTTCATTCTGTCAGCATAAAACAAGACAGGATACAGTAAGATCAGGTCACTCAGCCATGGTGTTTAGACATGGACCGATGTCAGGGGAACATTATATAGTCACCAAAGATTTAGATATTAATGTTGGATGTGGATCCAAACCCTCTGAAAAATACCCTGTTAGACTAGAATATTCTGCCAATGGTGGGAAAACATGGCATCCATTGGTTCCAAACTGTGCAAAGGTGTCGTCTGCAAGATGTTTTGATGTACACTTGTCACCATCTGTATACTATCGTGGAACAACACCCTACTGGAGAAGAGTTACCATTCCACTGGATAATGTTTATGTATGTGGGTCATTAAGATTTAGATGGTACCAGGGTTTTGTTCCTGATAACCATTTTGCACCAGAGTGGGCCATTGATAATGTGTTTATTGGCATGTCGTGCATGGATCATTGTCTAGGTCATGGAACATGTGCAGATACTATGATGTGTACATGTGACCAAGGTCATGGAGGTGATCAGATGGAAGAAAATAAATGGTGGATATGGAGTGGTGGCAAACTATCTGATAAATGTGGTAAATTGGTGTCAGGACCAAGTTTAACATTCAGTAACAAAGGAGAGAGAGTTTTAACTACTAGAGATCTAGACCTAAGTGTTGCTAGTTTGATACAGTTTTTCTTAAGACTTGGATGTAAGAAGATAACACCAAACTTATCTACCTTCCCTGTGTACCTCCAGTATAGTAACAATGGTGGTGTGTCATGGACCACAATAGAACAGTTTGACTTCAATAAAAACAGTAACAAGCCTACATATATAGCTCTACATCTACCAGAAAATGCCAGGACTAATAGTACTAGGATACGATGGTGGCAGCCATCAGTAGATGGTACATTTCTAGAAGATTGGGCCATCGATCATGTGTTTATTGGTGGAAATAAGAATGGTATAGAGCCATTACAGGATGATCCTATGTTACCTAGGGAAACCAGCTGGTTACTGTTCCCAGGAGGAAACTTACACACTGTATGCCAGTCAAATGGAAAAGTTATACAATTCAATGGAAACAATACTATACGTTATGCCATGTCTGGAGATGTTATCGTAGAAGATGGAAGTTTTATGCAGTTTAATGTTACGATGGGATGTACACCTTCTAAGGAATGCTATAGTAAGAATTATTTATTCTATCGAGAATACAGGTCTAAGCAGACGAGATTTAGATGGATACAGTCAAATCAATACAAAGCAGAACAAGTTTGGGCGTTATCTCATATTTATATAGGAAGAGACTGTATAGCTATGTGTAATGGACATGGTCACTGTTCTGACGCTGGTTGTCTTTGTGATGAGGGTTGGACAGGGGACGACTGTGATAATCCTGTGACTATACTACCTCATTTCCTGTATGACACTTTCTCTGCACCATTTGTCAATTCTCAACTTTGGATAAAGGTCATTGGAGCTAAGGTCAAGAGGCCATGCCAAGTTTTGGCTGCTGGAAATGCTCTACATTTTCAAGAGAGTTGTAGCAGACTACTACTAACAACTGATCTAGATTTAAGACAAGCTTTATTTGTCCAGTTCTACTTCTTGTTTGGTTGTAATTCCAAGCCAACCAACCGTAACCAAGGTGTGTTGGTAGACTACTCAACAGATGGTGGAATAACATGGATGCCAATTATGGAGTTGTATTATGCATTGTATAGATCTCCTAAATTTATAACAGTAAACTTACCATTGACTGCTAGAAAAAATGGAGTTCAAATAAGATGGTGGCAACCTGACAGTAGTGGAACCCAGGATGCTGATTGGTTGATAGATAATATCAGAATAGATAATGGACTCTCCTGGAATTATCTAACACCACAATGTCTGCCAAGTGACCCACAATGCAATGGTGGACCACAAATGGCTAGTTTATACCATAATGAACCTATGGGAATGTGGCGAAGATTTACATACAAACTGAATGGTCTGCCAGTCTCAAGGGCCACAAGATTTCGATGGTTCCAAAGAGCTGATGGTGAAACTGGTATAACTCACACATGGGGTCTAAACAAAGTTTATATTGGTCCTGCTTGTCCAGATCATTGTGATGGTCATGGTCAATGTTTGATTGACAGATGTGACTGTGACCATGGTTACACAGGAAGTGACTGTAAAATTATAACATATAACAATCCAAAAGCTTGCCATGACCTTGTAGAGGACAGTGCCATGGTGATGGGTGGTCCTGGTAACAGACAGCTGGTCACTGTTGACCTTGACCTTCAAAATGCAAAATTTGTCCAGTATGTAGCAGTTATCGGAGGTAACAGTTTAGAAGATGGTTGTTTTCCACCAACTTCACCAGAACACAGTATTATCTTACAGTATTCTACTAATGGAGGGTTGTATTGGAAGACTTTACATGTGTTGAGTTATGGTAGCTACACAGAACCAAAGAAAGATTACATTATACTACCAGTAGATGCTAGAACTCCTAGTACTATCATCAAATGGTGGCAGCCTTTATCACAGGATGGCTCACAAAAAGGACCACAATGGGCCCTGGACAATGTTTATATAGGTGGATCAGAGATTAATCCTAGCTCTTTGATGACAGATTTTGATACTATTCAAGGAGACGAGCCTTGGGAATTTAACCCCCATGGTCACATCCGATGGATAGATATGGCTAAGTCACAAATAGTAGTTGGCTGTAATAGACATCTTAATGCCTGTAACCACTACCCTCCAATCAGATTAGAATACAACAAGAATCCTCACACAGATAACTGGAATCTACTACAACCCTTATGTCTTCCTGACCACAACTTACTGATGGAGTGCCAGCCTAGTTATTATCATGCTCCCAGTGTTTACACACCTGATGGGTATCCTACCTGGACACTAGTCACTGTAGATCTTCCTGACAAAGTTTTTTCAGGATTCTACACAATACAATGTATAATGTCCTTTATAGGAGATTCCTGTCAGCCTCATAGAACTGGAATGTTGAGGAAAATGCATGAATCGTTTGAAGGTGGAATATACCCAAGATACTGGGAGTCCATAGCAGGTGGTGGTATAGGGTTTGGTTGTGGTGCATTATTACCCTATGCTCATGGAAAAACTTTGTATTTTAATGGATGTGGTCTTCGAGAGGCTCGTACTGCAGAAATGGATTTGTCTAATGCTTGGAAGATAATGTTTGTGCTACAGATTGGTTGTAAACAGCAGACAGATTCCTGTAATGTTAATGTAGGTGCAGGATCATACCGTGGCATACTGTTACAATACACTACCAATAAGGGTGCAGACTGGAAACTTTTAGCTAGACATGATCCAGGTCATTATTTAAACCCCAAACGAGCAGCATATGACCTTCCTGGTGATGCCAAGGCCATTGGAGTACAGTTAAGATGGTGGCAACCAGTTCATGACGGTATAGGACATGATCAGTGGGCCATTGATTCTATAGAAATTATACAGTAA

Transcript

Bpl_scaf_7318-4.34

Protein

Bpl_scaf_7318-4.34

MDRCGSTLALVDNEQVESDGYSSGYESTPEQSDSESTTPNLNPASFINRESVKIKEKMSYRNTQALAENLKTISSIPELCDVMFEVGSEKVKVYGVKAILGTRSRVLFNLILKKQKEAEFFTKAEKKDKKKKKNVTSSEKVTIVVKKYEPEDFRKIVQFIHSGSVDINSSCIAGILCGASQFGLDDLERACWDFVNHSINWTRMTLTLPYVAMTPHVRFRWKQTNNREPNWALDNGLCDFGFTGSTCNSKAVFNPMLLMENFEDDHILISSSLITVKGATISYISEMVLLPRDAKKSSCRFRWWQPYHSGQGHDIWAVDSISINHHLFNTLDVELEDGSNDTQHLIVNKGQITDGYCDGRRSVNFYEERQDDDIRFLMTEPLHVGPSYIIQFELVMGCHLMYDMTKDNHILLEYSGDHGLSWSLVINPCLPPTSCEEYNKGTIYDPSQYTKWRPVTVPLPSSTWGPMTKFRLRQSDWGPTDSWGVSRLYIGQECSGMCGGHGKCIEGVCHCDQGYVGDDCNPTSPMDTTMQADFGIRYQPDVDFLHIWGGEVTNGDKGCGTLFSGETLYFSGAGAREIQTKAFNTLTADYIEFYLRIGGNLPDCNGAEKREEGDHEDPVNSGKWLTITEGVRGKYCQAKDYTLILANQQNDKSVVTKDLQLQQGDVIQFRINVGCSTHFRLDHPVMLQYSHDGGQNWRLVHEPCYQESECNGLHTEGTIYYSGPHGQTCADTTVKPYGLFDWFDNHHDPSDGWKRILGGSLGLKCGVVDYGNALYFSEEGTREAVTRPLNTTYLRMVQFVIKIGGNDGSFTCSDPVNRNEGIIVDYSTDNEITWTVLKMVEPKIYNTTKEFVTLELPTDAKTNHTIFRWWQPLGYGGLRFASTQDYHVTQSTFLQFDIAMGCDSLYDSLYGVMLEYSIDMGQTWRPVIEECAPPNSPATRFRWKQVSSIPRGNVWALDNVYLGTGCPWLCSGHGYCREGTCICDPGFTGPACIPSQPLPDILRDDFNTDTPRKDNWLELYGGGNSKQCGTVVSGNAMTFNEDNMRLAVSKDIDSSMLEAIEFYFKYGCNGNKGFWPRSESVLLQYSINGGITWNLLKEINYRNQSDPKFFSLDLPMKAKTHATRFRFWQPRNGVVRKVQSILGRMASAWAVDNLYIGKMAMNPMSMTDNFDDKSLSNDWLFINDGRVGSFCQHKTRQDTVRSGHSAMVFRHGPMSGEHYIVTKDLDINVGCGSKPSEKYPVRLEYSANGGKTWHPLVPNCAKVSSARCFDVHLSPSVYYRGTTPYWRRVTIPLDNVYVCGSLRFRWYQGFVPDNHFAPEWAIDNVFIGMSCMDHCLGHGTCADTMMCTCDQGHGGDQMEENKWWIWSGGKLSDKCGKLVSGPSLTFSNKGERVLTTRDLDLSVASLIQFFLRLGCKKITPNLSTFPVYLQYSNNGGVSWTTIEQFDFNKNSNKPTYIALHLPENARTNSTRIRWWQPSVDGTFLEDWAIDHVFIGGNKNGIEPLQDDPMLPRETSWLLFPGGNLHTVCQSNGKVIQFNGNNTIRYAMSGDVIVEDGSFMQFNVTMGCTPSKECYSKNYLFYREYRSKQTRFRWIQSNQYKAEQVWALSHIYIGRDCIAMCNGHGHCSDAGCLCDEGWTGDDCDNPVTILPHFLYDTFSAPFVNSQLWIKVIGAKVKRPCQVLAAGNALHFQESCSRLLLTTDLDLRQALFVQFYFLFGCNSKPTNRNQGVLVDYSTDGGITWMPIMELYYALYRSPKFITVNLPLTARKNGVQIRWWQPDSSGTQDADWLIDNIRIDNGLSWNYLTPQCLPSDPQCNGGPQMASLYHNEPMGMWRRFTYKLNGLPVSRATRFRWFQRADGETGITHTWGLNKVYIGPACPDHCDGHGQCLIDRCDCDHGYTGSDCKIITYNNPKACHDLVEDSAMVMGGPGNRQLVTVDLDLQNAKFVQYVAVIGGNSLEDGCFPPTSPEHSIILQYSTNGGLYWKTLHVLSYGSYTEPKKDYIILPVDARTPSTIIKWWQPLSQDGSQKGPQWALDNVYIGGSEINPSSLMTDFDTIQGDEPWEFNPHGHIRWIDMAKSQIVVGCNRHLNACNHYPPIRLEYNKNPHTDNWNLLQPLCLPDHNLLMECQPSYYHAPSVYTPDGYPTWTLVTVDLPDKVFSGFYTIQCIMSFIGDSCQPHRTGMLRKMHESFEGGIYPRYWESIAGGGIGFGCGALLPYAHGKTLYFNGCGLREARTAEMDLSNAWKIMFVLQIGCKQQTDSCNVNVGAGSYRGILLQYTTNKGADWKLLARHDPGHYLNPKRAAYDLPGDAKAIGVQLRWWQPVHDGIGHDQWAIDSIEIIQ

Gene family

Gene family	Subfamily
Transcription Factors Family	ZBTB
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|BTB

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00651	BTB	BTB/POZ domain	Domain	Interproscan
PF07974	EGF_2	EGF-like domain	Domain	Interproscan
PF21471	Reelin_subrepeat-B	Reelin subrepeat B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210	Domain	BTB/POZ domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR011333	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR013111	Domain	EGF-like domain, extracellular	Interproscan
IPR034968	Family	Reelin	Interproscan
IPR036278	Homologous_superfamily	Sialidase superfamily	Interproscan
IPR049419	Repeat	Reelin, subrepeat B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11841	REELIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001764	Biological Process	neuron migration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007417	Biological Process	central nervous system development	Interproscan
GO:0070325	Molecular Function	lipoprotein particle receptor binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06249	RELN; reelin	EC:3.4.21.-	PI3K-Akt signaling pathway	ko04151	PMID: 28812709
			ECM-receptor interaction	ko04512	PMID: 28812709
			Focal adhesion	ko04510	PMID: 28812709
			Human papillomavirus infection	ko05165	PMID: 28812709

Expression pattern

1. Expression trend for Bpl_scaf_7318-4.34 global RNA-seq network